BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,286,401	Δ3,780 bp		[yejO]–[yejO]	[yejO], insH‑8, [yejO]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2286401	2290180	3780	105 [0]	[0] 104	[yejO]–[yejO]	[yejO],insH‑8,[yejO]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2286400	0 (0.000)	104 (1.170)	65/98	0.0	100%	pseudogene (2515/2525 nt)	yejO	adhesin‑like autotransporter YejO
*	?	NC_000913	2290181 =	0 (0.000)	104 (1.170)	65/98	0.0	100%	intergenic (‑1/‑319)	yejO/narP	adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP

Only 100 of 104 total aligned reads displayed.

GAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG  >  NC_000913/2290132‑2290229

cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:4332436‑M2/50‑50 (MQ=255)

cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:2659925‑M2/50‑50 (MQ=255)

cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:3098674‑M2/50‑50 (MQ=255)

cagaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:1317723‑M2/50‑50 (MQ=255)

 agaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:3601136‑M2/49‑49 (MQ=255)

 agaccgtgacacatcacagcctgtttattttctgttatcagaacgtccTg                                                 <  1:5980015‑M2/2‑1 (MQ=255)

  gaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:6083023‑M2/48‑48 (MQ=255)

  gaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:5205835‑M2/48‑48 (MQ=255)

  gaccgtgacacatcacagcctgtttattttctgttatcagaacgtcct                                                  >  1:723967‑M2/48‑48 (MQ=255)

   accgtgacgcatcacagcctgtttattttctgttatcagaacgtccTGAg                                               <  1:1253407‑M2/4‑1 (MQ=255)

   accgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAg                                               >  1:5731534‑M2/47‑50 (MQ=255)

   accgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAg                                               <  1:10971‑M2/4‑1 (MQ=255)

   accgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAg                                               >  1:4971719‑M2/47‑50 (MQ=255)

    ccgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGc                                              <  1:5668266‑M2/5‑1 (MQ=255)

     cgtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCt                                             >  1:1131854‑M2/45‑50 (MQ=255)

      gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt                                            <  1:5810972‑M2/7‑1 (MQ=255)

      gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt                                            <  1:2441921‑M2/7‑1 (MQ=255)

      gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt                                            <  1:418633‑M2/7‑1 (MQ=255)

      gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt                                            >  1:1607572‑M2/44‑50 (MQ=255)

      gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt                                            >  1:549934‑M2/44‑50 (MQ=255)

      gtgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCtt                                            <  1:5959837‑M2/7‑1 (MQ=255)

       tgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt                                           <  1:4042803‑M2/8‑1 (MQ=255)

       tgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt                                           <  1:6700262‑M2/8‑1 (MQ=255)

       tgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt                                           >  1:5176853‑M2/43‑50 (MQ=255)

       tgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt                                           >  1:6170667‑M2/43‑50 (MQ=255)

       tgacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt                                           <  1:2604209‑M2/8‑1 (MQ=255)

        gacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt                                           >  1:1875903‑M2/42‑49 (MQ=255)

        gacacatcacagcctgtttattttctgttatcagaacgtccTGAGCttt                                           >  1:4252453‑M2/42‑49 (MQ=255)

         acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTc                                          <  1:2677951‑M2/9‑1 (MQ=255)

         acacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCa                                         <  1:2359318‑M2/10‑1 (MQ=255)

          cacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCAt                                        >  1:5566091‑M2/40‑50 (MQ=255)

          cacatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCAt                                        >  1:1237587‑M2/40‑50 (MQ=255)

           acatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATc                                       >  1:794011‑M2/39‑50 (MQ=255)

           acatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATc                                       >  1:2074901‑M2/39‑50 (MQ=255)

           acatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATc                                       >  1:2944418‑M2/39‑50 (MQ=255)

           acatcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATc                                       <  1:1477756‑M2/12‑1 (MQ=255)

            catcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATcc                                      <  1:3953635‑M2/13‑1 (MQ=255)

              tcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTa                                    <  1:2581335‑M2/15‑1 (MQ=255)

              tcacagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTa                                    >  1:1091103‑M2/36‑50 (MQ=255)

                acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt                                   >  1:1470988‑M2/34‑49 (MQ=255)

                acagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTAt                                   <  1:2576179‑M2/16‑1 (MQ=255)

                 cagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATg                                  >  1:3110342‑M2/33‑49 (MQ=255)

                 cagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATg                                  >  1:5575881‑M2/33‑49 (MQ=255)

                 cagcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGa                                 <  1:3258288‑M2/18‑1 (MQ=255)

                  agcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGaa                                <  1:2596855‑M2/19‑1 (MQ=255)

                  agcctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGa                                 >  1:1702150‑M2/32‑49 (MQ=255)

                    cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat                              <  1:1012541‑M2/21‑1 (MQ=255)

                    cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat                              <  1:1388342‑M2/21‑1 (MQ=255)

                    cctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat                              >  1:629231‑M2/30‑50 (MQ=255)

                     ctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaatt                             <  1:5722597‑M2/22‑1 (MQ=255)

                     ctgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaat                              >  1:4719008‑M2/29‑49 (MQ=255)

                      tgtttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaatt                             >  1:5130931‑M2/28‑49 (MQ=255)

                        tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaat                          <  1:328933‑M2/25‑1 (MQ=255)

                        tttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaat                          <  1:5435986‑M2/25‑1 (MQ=255)

                         ttattttctgttatcagaacgtccTGAGCTTTCATCCTATGAaattaatt                         >  1:2682106‑M2/25‑50 (MQ=255)

                           attttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGc                       >  1:3593260‑M2/23‑50 (MQ=255)

                              ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTg                     <  1:725916‑M2/30‑1 (MQ=255)

                              ttctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt                    >  1:3450573‑M2/20‑50 (MQ=255)

                               tctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt                    >  1:2496052‑M2/19‑49 (MQ=255)

                               tctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGt                    <  1:4600361‑M2/31‑1 (MQ=255)

                                ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt                   >  1:6272571‑M2/18‑49 (MQ=255)

                                ctgttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGtt                   >  1:4676385‑M2/18‑49 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaaa               <  1:2996481‑M2/36‑1 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaa                <  1:5092655‑M2/35‑1 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaaa                <  1:4691966‑M2/35‑1 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa                 <  1:4300714‑M2/34‑1 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTaa                 >  1:195333‑M2/15‑48 (MQ=255)

                                   ttatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTa                  <  1:3039501‑M2/33‑1 (MQ=255)

                                    tatcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg              >  1:5456122‑M2/14‑50 (MQ=255)

                                     atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg              <  1:3348029‑M2/37‑1 (MQ=255)

                                     atcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAg              >  1:1824540‑M2/13‑49 (MQ=255)

                                      tcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGc             <  1:4391008‑M2/38‑1 (MQ=255)

                                      tcagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCa            <  1:6008220‑M2/39‑1 (MQ=255)

                                       cagaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt           >  1:2802434‑M2/11‑50 (MQ=255)

                                        agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt          >  1:6634017‑M2/10‑50 (MQ=255)

                                        agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt          <  1:879609‑M2/41‑1 (MQ=255)

                                        agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt          >  1:1056581‑M2/10‑50 (MQ=255)

                                        agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt          >  1:2280136‑M2/10‑50 (MQ=255)

                                        agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt          <  1:429251‑M2/41‑1 (MQ=255)

                                        agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt          >  1:2347747‑M2/10‑50 (MQ=255)

                                        agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt          <  1:3397235‑M2/41‑1 (MQ=255)

                                        agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAtt          >  1:3072437‑M2/10‑50 (MQ=255)

                                        agaacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCAt           <  1:3311653‑M2/40‑1 (MQ=255)

                                          aacgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTgg        <  1:6364776‑M2/43‑1 (MQ=255)

                                           acgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg       <  1:894015‑M2/44‑1 (MQ=255)

                                           acgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg       >  1:1114863‑M2/7‑50 (MQ=255)

                                           acgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg       <  1:6567443‑M2/44‑1 (MQ=255)

                                           acgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg       <  1:2803144‑M2/44‑1 (MQ=255)

                                            cgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg       >  1:3643714‑M2/6‑49 (MQ=255)

                                            cgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTggg       >  1:1661967‑M2/6‑49 (MQ=255)

                                            cgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGt      <  1:4795287‑M2/45‑1 (MQ=255)

                                            cgtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGt      <  1:4899680‑M2/45‑1 (MQ=255)

                                             gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa     >  1:6106692‑M2/5‑50 (MQ=255)

                                             gtccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa     >  1:3123040‑M2/5‑50 (MQ=255)

                                              tccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTAc    <  1:2919550‑M2/47‑1 (MQ=255)

                                              tccTGAGCTTTCATCCTATGAAATTAATTGCCGTTAAAAGCATTGGGTa     >  1:3319096‑M2/4‑49 (MQ=255)

                                               ccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa     >  1:4630017‑M2/3‑48 (MQ=255)

                                               ccTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTa     >  1:2169655‑M2/3‑48 (MQ=255)

                                                cTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAg  <  1:6107885‑M2/49‑1 (MQ=255)

                                                cTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAg  <  1:1193570‑M2/49‑1 (MQ=255)

GAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAG  >  NC_000913/2290132‑2290229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`