| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 81 [0] | [0] 80 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 78 (0.880) | 51/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCAT > NC_000913/2466496‑2466593 | tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:5042781/1‑49 (MQ=255)tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCt < 1:329300‑M1/50‑2 (MQ=255)tGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCt < 1:6188480‑M1/50‑2 (MQ=255) gACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:3180615/1‑48 (MQ=255) gACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTAccc > 1:4194285/1‑48 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta > 1:5699846‑M1/1‑46 (MQ=255) cGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCta > 1:4556481‑M1/1‑46 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag > 1:6630663‑M1/1‑45 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag > 1:6434905‑M1/1‑45 (MQ=255) gggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagag > 1:1246723‑M1/1‑45 (MQ=255) ggTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:906197‑M1/1‑44 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTGCCCtagagc > 1:6297550‑M1/1‑43 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:6110142‑M1/1‑43 (MQ=255) gTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagc > 1:1559474‑M1/1‑43 (MQ=255) aaaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagcca > 1:6188700‑M1/1‑41 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:5428453‑M1/1‑40 (MQ=255) aaaaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccat < 1:3022650‑M1/49‑10 (MQ=255) aaGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccata > 1:6545830‑M1/1‑38 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag > 1:3543653‑M1/1‑37 (MQ=255) aGTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacag > 1:2726750‑M1/1‑37 (MQ=255) gTGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagc > 1:5816035‑M1/1‑36 (MQ=255) tGGATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcc > 1:6087121‑M1/1‑35 (MQ=255) ggATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct > 1:4452106‑M1/1‑34 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctc < 1:2723278‑M1/50‑18 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctc < 1:851633‑M1/50‑18 (MQ=255) gATAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcct < 1:1310967‑M1/49‑17 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcac < 1:2002480‑M1/50‑20 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcac < 1:2862571‑M1/50‑20 (MQ=255) tAAAATAATTTTACCCACCGGATTTTTACCCtagagccatacagcctca > 1:4296798‑M1/1‑31 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac > 1:4463695‑M1/1‑29 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcacac > 1:49636‑M1/1‑29 (MQ=255) aaaTAATTTTACCCACCGGATTTTTACCCtagagccatacagcctcaca < 1:1821196‑M1/49‑21 (MQ=255) aataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacact > 1:1763254‑M1/1‑28 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:4840908‑M1/1‑27 (MQ=255) ataatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc < 1:2564882‑M1/50‑24 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:5041402‑M1/1‑26 (MQ=255) taatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactc > 1:1240414‑M1/1‑26 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:702940‑M1/1‑25 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:1279510‑M1/1‑25 (MQ=255) aatTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcga > 1:4312351‑M1/1‑25 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat < 1:3353672‑M1/50‑27 (MQ=255) atTTTACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat < 1:4110014‑M1/50‑27 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:3077525‑M1/1‑22 (MQ=255) tttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgat > 1:3901330‑M1/1‑22 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgag > 1:496319‑M1/1‑21 (MQ=255) ttACCCACCGGATTTTTACCCtagagccatacagcctcacactcgatga < 1:6423804‑M1/49‑29 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:2301956‑M1/1‑19 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:5147888‑M1/1‑19 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:1024091‑M1/1‑19 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:445514‑M1/1‑19 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggc > 1:237969‑M1/1‑19 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg < 1:1657114‑M1/49‑31 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg < 1:276897‑M1/49‑31 (MQ=255) aCCCACCGGATTTTTACCCtagagccatacagcctcacactcgatgagg < 1:6023165‑M1/49‑31 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc < 1:891695‑M1/50‑33 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:1802406‑M1/1‑18 (MQ=255) cccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcc > 1:6051950‑M1/1‑18 (MQ=255) ccACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcct > 1:1394790‑M1/1‑17 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg < 1:3772330‑M1/50‑35 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg < 1:1658295‑M1/50‑35 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg < 1:2413905‑M1/50‑35 (MQ=255) cACCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctg > 1:1128205‑M1/1‑16 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:6680536‑M1/1‑15 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt < 1:3810797‑M1/50‑36 (MQ=255) aCCGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt < 1:2937028‑M1/50‑36 (MQ=255) ccGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:1378896‑M1/1‑14 (MQ=255) cGGATTTTTACCCtagagccatacagcctcacactcgatgaggcctgt > 1:5496109‑M1/1‑13 (MQ=255) gATTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagt < 1:2089512‑M1/50‑40 (MQ=255) aTTTTTACCCtagagccatacagcctcacactcgatgaggcctgtcagtt < 1:179892‑M1/50‑41 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt > 1:5361854‑M1/1‑9 (MQ=255) tttttACCCtagagccatacagcctcacactcgatgaggcctgtcagttt < 1:1587036‑M1/50‑42 (MQ=255) tttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:1005453‑M1/1‑7 (MQ=255) ttACCCtagagccatacagcctcacactcgatgaggcctgtcagtttct > 1:2154580‑M1/1‑6 (MQ=255) tACCCtagagccatacagcctcacactcgatgaggcctgtcagtttctt < 1:1478261‑M1/49‑45 (MQ=255) tACCCtagagccatacagcctcacactcgatgaggcctgtcagtttctt < 1:2257535‑M1/49‑45 (MQ=255) ccctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaa < 1:4001793‑M1/50‑48 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:2411479‑M1/1‑2 (MQ=255) cctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa < 1:3166265‑M1/50‑49 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaat < 1:3845859‑M1/50‑50 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:4754885‑M1/1‑1 (MQ=255) ctagagccatacagcctcacactcgatgaggcctgtcagtttcttaaaa > 1:92892‑M1/1‑1 (MQ=255) | TGACGGGTAAAAAGTGGATAAAATAATTTTACCCACCGGATTTTTACCCATGCTCACCGTTAAGCAGATTGAAGCAGCAAAGCCGAAAGAAAAACCAT > NC_000913/2466496‑2466593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |