| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 81 [0] | [0] 80 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 78 (0.880) | 51/98 | 0.0 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
ACGAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476130‑2476228 | tgacgggtaaaaagtggataaaataattttacccaccggatttttaccct < 1:329300‑M2/1‑1 (MQ=255)tgacgggtaaaaagtggataaaataattttacccaccggatttttaccct < 1:6188480‑M2/1‑1 (MQ=255) cgggtaaaaagtggataaaataattttacccaccggatttttacccTa > 1:4556481‑M2/47‑48 (MQ=255) cgggtaaaaagtggataaaataattttacccaccggatttttacccTa > 1:5699846‑M2/47‑48 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTagag > 1:6630663‑M2/46‑50 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTagag > 1:1246723‑M2/46‑50 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTagag > 1:6434905‑M2/46‑50 (MQ=255) ggtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:906197‑M2/45‑50 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttgcccTAGAGc > 1:6297550‑M2/44‑49 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:1559474‑M2/44‑49 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:6110142‑M2/44‑49 (MQ=255) aaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa > 1:6188700‑M2/42‑49 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCAt < 1:3022650‑M2/9‑1 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:5428453‑M2/41‑50 (MQ=255) aagtggataaaataattttacccaccggatttttacccTAGAGCCATa > 1:6545830‑M2/39‑48 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg > 1:2726750‑M2/38‑50 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg > 1:3543653‑M2/38‑50 (MQ=255) gtggataaaataattttacccaccggatttttacccTAGAGCCATACAGc > 1:5816035‑M2/37‑50 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc > 1:6087121‑M2/36‑50 (MQ=255) ggataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 1:4452106‑M2/35‑50 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt < 1:1310967‑M2/16‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTc < 1:851633‑M2/17‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTc < 1:2723278‑M2/17‑1 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTcac < 1:2002480‑M2/19‑1 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTcac < 1:2862571‑M2/19‑1 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 1:4296798‑M2/32‑49 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTcaca < 1:1821196‑M2/20‑1 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac > 1:49636‑M2/30‑50 (MQ=255) aaataattttacccaccggatttttacccTAGAGCCATACAGCCTCacac > 1:4463695‑M2/30‑50 (MQ=255) aataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACt > 1:1763254‑M2/29‑50 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc < 1:2564882‑M2/23‑1 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:4840908‑M2/28‑50 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:5041402‑M2/27‑49 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:1240414‑M2/27‑49 (MQ=255) aattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa > 1:702940‑M2/26‑50 (MQ=255) aattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa > 1:4312351‑M2/26‑50 (MQ=255) aattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGa > 1:1279510‑M2/26‑50 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt < 1:3353672‑M2/26‑1 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt < 1:4110014‑M2/26‑1 (MQ=255) tttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:3077525‑M2/23‑48 (MQ=255) tttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:3901330‑M2/23‑48 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGa < 1:6423804‑M2/28‑1 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg > 1:496319‑M2/22‑50 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg < 1:1657114‑M2/30‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg < 1:6023165‑M2/30‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg < 1:276897‑M2/30‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:5147888‑M2/20‑50 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:1024091‑M2/20‑50 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:445514‑M2/20‑50 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:2301956‑M2/20‑50 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:237969‑M2/20‑50 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc < 1:891695‑M2/32‑1 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc > 1:1802406‑M2/19‑50 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc > 1:6051950‑M2/19‑50 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 1:1394790‑M2/18‑50 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg < 1:3772330‑M2/34‑1 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg < 1:2413905‑M2/34‑1 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg > 1:1128205‑M2/17‑50 (MQ=255) caccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTg < 1:1658295‑M2/34‑1 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt < 1:3810797‑M2/35‑1 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:6680536‑M2/16‑50 (MQ=255) accggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt < 1:2937028‑M2/35‑1 (MQ=255) ccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:1378896‑M2/15‑49 (MQ=255) cggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGt > 1:5496109‑M2/14‑48 (MQ=255) gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGt < 1:2089512‑M2/39‑1 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt < 1:179892‑M2/40‑1 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt < 1:1587036‑M2/41‑1 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt > 1:5361854‑M2/10‑50 (MQ=255) tttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 1:1005453‑M2/8‑50 (MQ=255) ttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCt > 1:2154580‑M2/7‑49 (MQ=255) tacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCtt < 1:2257535‑M2/44‑1 (MQ=255) tacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCtt < 1:1478261‑M2/44‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaa < 1:4001793‑M2/47‑1 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:2411479‑M2/3‑50 (MQ=255) ccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa < 1:3166265‑M2/48‑1 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:92892‑M2/2‑49 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaaa > 1:4754885‑M2/2‑49 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAAt < 1:3845859‑M2/49‑1 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 1:5650157/1‑50 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 1:4377110/1‑50 (MQ=255) | ACGAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476130‑2476228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |