BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,761,993	Δ8,250 bp		rhsA–yibV	rhsA, yibA, yibJ, yibG, yibS, yibV

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3761993	3770242	8250	133 [0]	[0] 131	rhsA–yibV	rhsA,yibA,yibJ,yibG,yibS,yibV

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3761992	0 (0.000)	129 (1.490)	74/96	0.0	100%	intergenic (‑37/‑191)	yibF/rhsA	glutathione transferase‑like protein YibF/rhs element protein RhsA
*	?	NC_000913	3770243 =	0 (0.000)	129 (1.490)	74/96	0.0	100%	coding (1137/1137 nt)	yibH	inner membrane protein YibH

Only 100 of 131 total aligned reads displayed.

ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCA  >  NC_000913/3770194‑3770292

gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct                                                   <  1:3794707‑M2/1‑1 (MQ=255)

gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct                                                   >  1:80115‑M2/50‑50 (MQ=255)

  cgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCa                                                 <  1:657008‑M2/3‑1 (MQ=255)

   gagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCaa                                                <  1:3961173‑M2/4‑1 (MQ=255)

    agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt                                               >  1:2062711‑M2/46‑50 (MQ=255)

    agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt                                               >  1:6345408‑M2/46‑50 (MQ=255)

     gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt                                               >  1:4174468‑M2/45‑49 (MQ=255)

     gtttcataccgagtcctttgtccgatgataaatatcagtatggcTCAAt                                               <  1:1154482‑M2/5‑1 (MQ=255)

      tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa                                             >  1:123231‑M2/44‑50 (MQ=255)

      tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa                                             <  1:5030833‑M2/7‑1 (MQ=255)

        tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt                                            <  1:3274147‑M2/8‑1 (MQ=255)

        tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt                                            <  1:2937149‑M2/8‑1 (MQ=255)

        tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc                                           >  1:1353551‑M2/42‑50 (MQ=255)

          atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATcc                                          <  1:4624594‑M2/10‑1 (MQ=255)

          atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa                                         <  1:640190‑M2/11‑1 (MQ=255)

           tgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaa                                        <  1:2976401‑M2/12‑1 (MQ=255)

           tgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaa                                        <  1:3047677‑M2/12‑1 (MQ=255)

            gccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa                                       >  1:170355‑M2/38‑50 (MQ=255)

             ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa                                       <  1:4429806‑M2/13‑1 (MQ=255)

             ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa                                       <  1:5795408‑M2/13‑1 (MQ=255)

              cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt                                      >  1:6246046‑M2/36‑49 (MQ=255)

              cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa                                     <  1:5519135‑M2/15‑1 (MQ=255)

               gagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaa                                    <  1:2686779‑M2/16‑1 (MQ=255)

                agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa                                   <  1:377993‑M2/17‑1 (MQ=255)

                agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa                                   <  1:5675615‑M2/17‑1 (MQ=255)

                 gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAg                                  <  1:1770590‑M2/18‑1 (MQ=255)

                    ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGAt                                >  1:3560025‑M2/30‑49 (MQ=255)

                    ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa                               <  1:3529891‑M2/21‑1 (MQ=255)

                     tttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa                              >  1:2128358‑M2/29‑50 (MQ=255)

                      ttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt                             >  1:2730336‑M2/28‑50 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa                              <  1:1681698‑M2/22‑1 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt                             <  1:301234‑M2/23‑1 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                            >  1:1363088‑M2/27‑50 (MQ=255)

                        gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                            <  1:6084363‑M2/24‑1 (MQ=255)

                        gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                            <  1:2769707‑M2/24‑1 (MQ=255)

                        gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                            <  1:5972859‑M2/24‑1 (MQ=255)

                        gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                            <  1:3805973‑M2/24‑1 (MQ=255)

                        gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                            <  1:250114‑M2/24‑1 (MQ=255)

                         tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa                          >  1:4379544‑M2/25‑50 (MQ=255)

                         tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa                          >  1:6621074‑M2/25‑50 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt                         <  1:1104481‑M2/27‑1 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt                         <  1:5310864‑M2/27‑1 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                        <  1:1526710‑M2/28‑1 (MQ=255)

                            gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATcc                       <  1:4044667‑M2/29‑1 (MQ=255)

                            gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATcc                       <  1:3274943‑M2/29‑1 (MQ=255)

                             aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                        >  1:64635‑M2/21‑48 (MQ=255)

                             aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                        >  1:922183‑M2/21‑48 (MQ=255)

                             aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCa                      <  1:2641075‑M2/30‑1 (MQ=255)

                              ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg                     >  1:3554523‑M2/20‑50 (MQ=255)

                              ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg                     >  1:2202672‑M2/20‑50 (MQ=255)

                              ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg                     >  1:3979506‑M2/20‑50 (MQ=255)

                              ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg                     <  1:5505086‑M2/31‑1 (MQ=255)

                              ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg                     <  1:1927399‑M2/31‑1 (MQ=255)

                               gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc                    >  1:1979909‑M2/19‑50 (MQ=255)

                               gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc                    >  1:2864263‑M2/19‑50 (MQ=255)

                                aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt                   <  1:3731195‑M2/33‑1 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                  >  1:2345129‑M2/17‑50 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                  <  1:735364‑M2/34‑1 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                  <  1:2296146‑M2/34‑1 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                  <  1:2142536‑M2/34‑1 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                  <  1:5494381‑M2/34‑1 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                  <  1:4524709‑M2/34‑1 (MQ=255)

                                   aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt                <  1:31830‑M2/36‑1 (MQ=255)

                                   aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt                <  1:890207‑M2/36‑1 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt                >  1:1357325‑M2/14‑49 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc               <  1:4819148‑M2/37‑1 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc               <  1:6019706‑M2/37‑1 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc               <  1:2136562‑M2/37‑1 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc               <  1:5184397‑M2/37‑1 (MQ=255)

                                     tatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCa              >  1:4183943‑M2/13‑50 (MQ=255)

                                     tatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCa              >  1:2787812‑M2/13‑50 (MQ=255)

                                     tatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCa              <  1:3033805‑M2/38‑1 (MQ=255)

                                      atcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt             >  1:3486383‑M2/12‑50 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt            <  1:1284418‑M2/40‑1 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt            <  1:5360427‑M2/40‑1 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt            >  1:2411729‑M2/11‑50 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt             <  1:3567200‑M2/39‑1 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc           <  1:6188207‑M2/41‑1 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc           <  1:3984745‑M2/41‑1 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc           <  1:312956‑M2/41‑1 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt          >  1:519208‑M2/9‑50 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt          <  1:1923498‑M2/42‑1 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt          >  1:6248123‑M2/9‑50 (MQ=255)

                                          gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCtt         <  1:4907101‑M2/43‑1 (MQ=255)

                                          gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt          >  1:4565885‑M2/8‑49 (MQ=255)

                                          gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt          >  1:4836843‑M2/8‑49 (MQ=255)

                                           tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt          >  1:438346‑M2/7‑48 (MQ=255)

                                           tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt          >  1:3713214‑M2/7‑48 (MQ=255)

                                           tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt          >  1:3499135‑M2/7‑48 (MQ=255)

                                           tatggcTCAATGATCCAAATAAAGACAATGCATCCAGCTGGTCATTCTTa        <  1:6420558‑M2/44‑1 (MQ=255)

                                             tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag       <  1:5271749‑M2/45‑1 (MQ=255)

                                             tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag       >  1:5844960‑M2/5‑49 (MQ=255)

                                              ggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag       >  1:3976914‑M2/4‑48 (MQ=255)

                                              ggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag       >  1:3694025‑M2/4‑48 (MQ=255)

                                               gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag    >  1:4744429‑M2/3‑50 (MQ=255)

                                               gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag    >  1:2137213‑M2/3‑50 (MQ=255)

                                               gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagca     <  1:3405474‑M2/47‑1 (MQ=255)

                                               gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagca     <  1:1833567‑M2/47‑1 (MQ=255)

                                                cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcagc   <  1:1710484‑M2/49‑1 (MQ=255)

                                                 tcAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAgcagca  >  1:3356079/1‑50 (MQ=255)

ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCA  >  NC_000913/3770194‑3770292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`