| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 380111 | 0 (0.000) | 42 (0.820) +CGAGATGGACG |
30/76 | 0.1 | 62.3% | coding (732/774 nt) | yaiO | outer membrane protein YaiO |
| ? | NC_000913 | 624576 = | 66 (0.990) | intergenic (‑66/‑309) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC | |||||
GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGCCCGA > NC_000913/380062‑380160 | gAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTa < 1:2246003/50‑1 (MQ=255) aaGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:4650711‑M1/1‑49 (MQ=255) aaGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:2152024‑M1/1‑49 (MQ=255) gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgag < 1:2558198‑M1/50‑5 (MQ=255) gAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAc > 1:660352‑M1/1‑46 (MQ=255) aTCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagat > 1:2013245‑M1/1‑44 (MQ=255) cAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatg > 1:1981624‑M1/1‑42 (MQ=255) aGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatgg < 1:2614207‑M1/49‑9 (MQ=255) gAAATTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggac < 1:4882264‑M1/50‑11 (MQ=255) aaTTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacg < 1:2079436‑M1/50‑12 (MQ=255) tCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcc > 1:2971125‑M1/1‑35 (MQ=255) ccAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtccc > 1:4852750‑M1/1‑34 (MQ=255) ccAGGTCAGACGGGATGCAAGTTGCAGACCGTTAcgagatggacggtcc < 1:1748792‑M1/49‑16 (MQ=255) cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccc > 1:656193‑M1/1‑33 (MQ=255) cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccc > 1:459393‑M1/1‑33 (MQ=255) cAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtccc < 1:2925142‑M1/49‑17 (MQ=255) aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct < 1:589801‑M1/50‑19 (MQ=255) aGGTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccct > 1:2411120‑M1/1‑32 (MQ=255) ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc > 1:3693775‑M1/1‑31 (MQ=255) ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc < 1:2569992‑M1/50‑20 (MQ=255) ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctc < 1:1247539‑M1/50‑20 (MQ=255) ggTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcacctc < 1:4159381‑M1/50‑20 (MQ=255) gTCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcg < 1:4643690‑M1/50‑21 (MQ=255) tCAGACGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgc < 1:959711‑M1/50‑22 (MQ=255) aCGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccc > 1:3646529‑M1/1‑25 (MQ=255) cGGGCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccct < 1:2589957‑M1/50‑27 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt < 1:2959831‑M1/50‑28 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt < 1:316227‑M1/50‑28 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt < 1:3197747‑M1/50‑28 (MQ=255) gggCTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgccccctt < 1:4008960‑M1/50‑28 (MQ=255) cTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg > 1:2869362‑M1/1‑20 (MQ=255) cTGCAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg > 1:421399‑M1/1‑20 (MQ=255) gCAAGTTGCAGACCGTTAcgagatggacggtcccctcgctcccttggg > 1:1276585‑M1/1‑18 (MQ=255) cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttgggg < 1:1151291‑M1/48‑32 (MQ=255) cAAGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggg > 1:646404‑M1/1‑17 (MQ=255) aaGGTGCAGGCCGTTAcgagatgggcggtcccctcgcccccttggggaga < 1:3109869‑M1/50‑35 (MQ=255) aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag < 1:1105180‑M1/50‑36 (MQ=255) aGTTGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagag > 1:3022331‑M1/1‑15 (MQ=255) gTTGCAGACCGTTAcgagatggacggtcccctcgccccctttgggagagg < 1:3576686‑M1/50‑37 (MQ=255) ttGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagaggg > 1:3467844‑M1/1‑13 (MQ=255) ttGCAGACCGTTAcgagatggacggtcccctcgcccccttggggagaggg > 1:4322755‑M1/1‑13 (MQ=255) cAGACCGTTAcgagatggacggtcccctcgcccccttggggagagggtt < 1:220613‑M1/49‑40 (MQ=255) aGACCGTTAcgagatggacggtcccctcgcccccttggggagagggttag > 1:1743257‑M1/1‑9 (MQ=255) aCCGTTAcgagatggacggtcccctcgcccccttggggagagggttaggg > 1:428282‑M1/1‑7 (MQ=255) ccGTTAcgagatggacggtcccctcgcccccttggggagagggttagggt < 1:4645524‑M1/50‑45 (MQ=255) cGTTAcgagatggacggtcccctcgcccccttggggagagggttagggtg < 1:917510‑M1/50‑46 (MQ=255) ttAcgagatggacggtcccctcgcccccttggggagagggttagggtgag < 1:1770394‑M1/50‑48 (MQ=255) ttAcgagatggacggtcccctcgcccccttggggagagggttagggtgag < 1:1315182‑M1/50‑48 (MQ=255) ttAcgagatggacggtcccctcgcccccttggggagagggttagggtgag < 1:1170661‑M1/50‑48 (MQ=255) ttAcgagatggacggtcccctcgcccccttggggagagggttagggtgag > 1:708781‑M1/1‑3 (MQ=255) tAcgagatggacggtcccctcgcccccttggggagagggttagggtgagg > 1:2180369‑M1/1‑2 (MQ=255) acgagatggacggtcccctcgcccccttggggagagggttagggtgaggg > 1:3160509‑M1/1‑1 (MQ=255) | GAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTACCACACTTTACCTGCCGTCAGCCCGA > NC_000913/380062‑380160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |