BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 380111	0 (0.000)	42 (0.820) +CGAGATGGACG	30/76	0.1	62.3%	coding (732/774 nt)	yaiO	outer membrane protein YaiO
*	?	NC_000913	624576 =	66 (0.990)	42 (0.820) +CGAGATGGACG	30/76	0.1	62.3%	intergenic (‑66/‑309)	fepB/entC	ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC

Only 100 of 108 total aligned reads displayed.

ATTAATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGC  >  NC_000913/624527‑624620

attaATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCg                                              >  1:1732095/1‑50 (MQ=255)

 ttaATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGt                                             >  1:2437372/1‑50 (MQ=255)

   tccaggtcagacgggctgcaagttgcagaccgttacgagatggacgGTcc                                           >  1:2971125‑M2/47‑50 (MQ=255)

   aataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTcc                                           >  1:1187693/1‑50 (MQ=255)

   aataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTcc                                           >  1:3941979/1‑50 (MQ=255)

   aataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTcc                                           >  1:1434118/1‑50 (MQ=255)

   aataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTc                                            <  1:2200287/49‑1 (MQ=255)

    ccaggtcagacgggctgcaagttgcagaccgttacgagatggacgGTccc                                          >  1:4852750‑M2/46‑50 (MQ=255)

    ccaggtcagacgggatgcaagttgcagaccgttacgagatggacgGTcc                                           <  1:1748792‑M2/4‑1 (MQ=255)

    ataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTccc                                          >  1:1152737/1‑50 (MQ=255)

    ataaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTccc                                          >  1:4982383/1‑50 (MQ=255)

     caggtcagacgggctgcaagttgcagaccgttacgagatggacgGTcccc                                         >  1:656193‑M2/45‑50 (MQ=255)

     caggtcagacgggctgcaagttgcagaccgttacgagatggacgGTcccc                                         >  1:459393‑M2/45‑50 (MQ=255)

     caggtcagacgggctgcaagttgcagaccgttacgagatggacgGTccc                                          <  1:2925142‑M2/5‑1 (MQ=255)

      aggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCt                                        >  1:2411120‑M2/44‑50 (MQ=255)

      aggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCt                                        <  1:589801‑M2/7‑1 (MQ=255)

      aaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCt                                        >  1:2588680/1‑50 (MQ=255)

      aaGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCt                                        >  1:596020/1‑50 (MQ=255)

       ggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTc                                       <  1:2569992‑M2/8‑1 (MQ=255)

       ggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTc                                       <  1:1247539‑M2/8‑1 (MQ=255)

       ggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTc                                       >  1:3693775‑M2/43‑50 (MQ=255)

       ggtcagacgggctgcaagttgcagaccgttacgagatggacgGTCACCTc                                       <  1:4159381‑M2/8‑1 (MQ=255)

       aGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTc                                       <  1:4640091/50‑1 (MQ=255)

        gtcagacgggctgcaagttgcagaccgttacgagatggacgGTCCCCTCg                                      <  1:4643690‑M2/9‑1 (MQ=255)

        ggTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCg                                      >  1:4142932/1‑50 (MQ=255)

          ttAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGcc                                    <  1:3569267/50‑1 (MQ=255)

          ttAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGcc                                    >  1:3781912/1‑50 (MQ=255)

            aaGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGcccc                                  >  1:3701201/1‑50 (MQ=255)

            aaGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGccc                                   <  1:1800417/49‑1 (MQ=255)

            aaGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGccc                                   <  1:2673650/49‑1 (MQ=255)

            aaGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGccc                                   <  1:4418269/49‑1 (MQ=255)

             acgggctgcaagttgcagaccgttacgagatggacgGTCCCCTCgccccc                                 >  1:3646529‑M2/37‑49 (MQ=255)

             aGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCt                                 >  1:456526/1‑50 (MQ=255)

              gggCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCtt                                >  1:2118668/1‑50 (MQ=255)

               gggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCctt                               <  1:316227‑M2/16‑1 (MQ=255)

               gggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCctt                               <  1:3197747‑M2/16‑1 (MQ=255)

               gggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCctt                               <  1:2959831‑M2/16‑1 (MQ=255)

               gggctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCctt                               <  1:4008960‑M2/16‑1 (MQ=255)

               ggCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCttt                               <  1:169222/50‑1 (MQ=255)

                gCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTg                              >  1:431714/1‑50 (MQ=255)

                gCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTg                              >  1:2875355/1‑50 (MQ=255)

                 cGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTgg                             >  1:3665577/1‑50 (MQ=255)

                  gTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTggg                            >  1:180268/1‑50 (MQ=255)

                  ctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTggg                            >  1:421399‑M2/32‑50 (MQ=255)

                  ctgcaagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTggg                            >  1:2869362‑M2/32‑50 (MQ=255)

                   tAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTgggg                           <  1:132411/50‑1 (MQ=255)

                   tAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTggg                            >  1:3351856/1‑49 (MQ=255)

                    gcaagttgcagaccgttacgagatggacgGTCCCCTCGCTCCCTTggg                            >  1:1276585‑M2/30‑48 (MQ=255)

                    aaTGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTggg                            >  1:2217350/1‑48 (MQ=255)

                     caagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTgggg                           <  1:1151291‑M2/20‑1 (MQ=255)

                     caagttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTggg                            >  1:646404‑M2/29‑47 (MQ=255)

                     aTGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTggg                            >  1:1292593/1‑47 (MQ=255)

                     aTGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTggg                            >  1:3527264/1‑47 (MQ=255)

                     aTGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGga                          <  1:3416676/49‑1 (MQ=255)

                      tGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGga                          >  1:1598231/1‑48 (MQ=255)

                      aaggtgcaggccgttacgagatgggcgGTCCCCTCGCCCCCTTGGGgaga                        <  1:3109869‑M2/23‑1 (MQ=255)

                       gACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGagag                       >  1:1699501/1‑50 (MQ=255)

                       gACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGagag                       >  1:1242272/1‑50 (MQ=255)

                       agttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGagag                       <  1:1105180‑M2/24‑1 (MQ=255)

                       agttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGagag                       >  1:3022331‑M2/27‑50 (MQ=255)

                        gttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTTGGGAGAgg                      <  1:3576686‑M2/25‑1 (MQ=255)

                         ttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAggg                     >  1:4322755‑M2/25‑50 (MQ=255)

                         ttgcagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAggg                     >  1:3467844‑M2/25‑50 (MQ=255)

                          aaaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt                    >  1:2631491/1‑50 (MQ=255)

                          aaaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt                    >  1:3488814/1‑50 (MQ=255)

                           aaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGtt                   <  1:3426082/50‑1 (MQ=255)

                           aaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGtt                   <  1:4229803/50‑1 (MQ=255)

                           aaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt                    >  1:3636110/1‑49 (MQ=255)

                           aaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt                    >  1:1193685/1‑49 (MQ=255)

                           aaTTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGt                    >  1:2006499/1‑49 (MQ=255)

                            cagaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGtt                   <  1:220613‑M2/28‑1 (MQ=255)

                             ttCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAg                 >  1:5059683/1‑50 (MQ=255)

                             agaccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAg                 >  1:1743257‑M2/21‑50 (MQ=255)

                               cGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAggg               >  1:2259992/1‑50 (MQ=255)

                               accgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAggg               >  1:428282‑M2/19‑50 (MQ=255)

                                gACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGt              >  1:4749493/1‑50 (MQ=255)

                                ccgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGt              <  1:4645524‑M2/33‑1 (MQ=255)

                                 cgttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTg             <  1:917510‑M2/34‑1 (MQ=255)

                                 aCAAAGCGCCCAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGt              >  1:3423833/1‑49 (MQ=255)

                                 aCAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGt              >  1:3430155/1‑49 (MQ=255)

                                 aCAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGt              >  1:5060115/1‑49 (MQ=255)

                                  cAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGt              >  1:1300810/1‑48 (MQ=255)

                                  cAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGt              >  1:5126738/1‑48 (MQ=255)

                                   ttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAg           >  1:708781‑M2/15‑50 (MQ=255)

                                   ttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAg           <  1:1315182‑M2/36‑1 (MQ=255)

                                   ttacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAg           <  1:1170661‑M2/36‑1 (MQ=255)

                                   aaaGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAg           <  1:1547634/50‑1 (MQ=255)

                                   aaaGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAg           >  1:4602162/1‑50 (MQ=255)

                                   aaaGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAg           >  1:1599976/1‑50 (MQ=255)

                                    tacgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAgg          >  1:2180369‑M2/14‑50 (MQ=255)

                                    aaGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAgg          >  1:2704253/1‑50 (MQ=255)

                                     acgagatggacgGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAggg         >  1:3160509‑M2/13‑50 (MQ=255)

                                       cgcACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAgggg        >  1:3230898/1‑49 (MQ=255)

                                         cacaATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGaa      >  1:466627/1‑49 (MQ=255)

                                         cacaATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAc     <  1:1766601/50‑1 (MQ=255)

                                          acaATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGaa      >  1:1657928/1‑48 (MQ=255)

                                          acaATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAca    <  1:364523/50‑1 (MQ=255)

                                          acaATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAca    <  1:914829/50‑1 (MQ=255)

                                           caATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAAcag   <  1:476126/50‑1 (MQ=255)

                                            aaTCCGTCCCCTCGCCCCTTTGGGGAGAGGGCTAGGGTGAGGGGAAcagc  >  1:1544310/1‑50 (MQ=255)

ATTAATAAGGTTAAGGGCGTAATGACAAATTCGACAAAGCGCACAATCCGTCCCCTCGCCCCTTTGGGGAGAGGGTTAGGGTGAGGGGAACAGC  >  NC_000913/624527‑624620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.