| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 125 [0] | [0] 124 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 120 (1.280) | 63/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
Only 100 of 128 total aligned reads displayed.
TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGA < 1:6616628/50‑1TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGCGATACCGGCATCGA > 1:4634555/1‑50 TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT < 1:5106788/49‑1 CTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGT < 1:1838084/49‑1 TACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT > 1:3582600/1‑50 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGT < 1:5557216/50‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTG < 1:6280052/49‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT < 1:7281750/48‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCT < 1:5854405/48‑1 CCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTC < 1:614564/47‑1 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA < 1:7118607/50‑1 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA > 1:3731397/1‑50 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA < 1:7290125/50‑1 CAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTA > 1:3558916/1‑50 AGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:6218687/1‑50 GAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATC < 1:3378496/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:5014233/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:6744740/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCA < 1:2388188/50‑1 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:4520902/1‑48 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:3045327/1‑48 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:6955826/1‑48 AAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTAT > 1:4926751/1‑48 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG > 1:3717976/1‑50 AAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG < 1:3438177/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG < 1:3877082/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG < 1:1520128/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG < 1:1087481/50‑1 AATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAG > 1:5379642/1‑49 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGA < 1:2129778/50‑1 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGA < 1:805405/50‑1 ATTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGG > 1:305429/1‑49 TTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCCGGAA > 1:6742370/1‑50 TTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAA > 1:2814771/1‑50 TTCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAA < 1:5854767/50‑1 TCACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT > 1:1440673/1‑50 CACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAAT < 1:1600999/49‑1 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT < 1:5412579/50‑1 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGT < 1:6967416/50‑1 ACGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATG < 1:534014/49‑1 CGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTT < 1:6638616/50‑1 CGGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTT < 1:1064099/50‑1 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC < 1:559722/50‑1 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC < 1:822987/50‑1 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC < 1:7263015/50‑1 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC > 1:1075994/1‑50 GGCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTC < 1:2399536/50‑1 GCATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCG < 1:4763197/50‑1 CATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGG > 1:2865874/1‑50 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG > 1:5472193/1‑50 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG > 1:3161970/1‑50 ATCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGG < 1:4122286/50‑1 TCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT < 1:2051539/50‑1 TCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT < 1:3888041/50‑1 TCGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT < 1:3543866/50‑1 CGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT > 1:1971424/1‑49 CGGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGT > 1:5997089/1‑49 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT < 1:4096469/49‑1 GGCTAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTT > 1:3945496/1‑49 TAGGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAA > 1:6155324/1‑49 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT < 1:6921952/50‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:762086/1‑50 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA < 1:1616683/49‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATA < 1:26281/49‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAAT < 1:1257278/48‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAAT < 1:3036725/48‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAAT < 1:4343230/48‑1 GGGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAAT < 1:4787197/48‑1 GGTGATATCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:2067879/1‑49 GGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:5668305/1‑49 GGTGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATAT > 1:3703784/1‑49 TGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG < 1:4876926/50‑1 TGATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG < 1:6708395/50‑1 GATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAG > 1:4534800/1‑49 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCA < 1:1142901/50‑1 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC > 1:4189513/1‑49 ATACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGC < 1:2166607/49‑1 TACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA < 1:5068096/50‑1 TACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA < 1:6342142/50‑1 ACCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAA > 1:1445713/1‑49 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAA < 1:3451664/50‑1 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA < 1:655040/49‑1 CCGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA < 1:4393339/49‑1 CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAA < 1:3377976/50‑1 CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAA < 1:4792956/50‑1 CGGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAA > 1:2905505/1‑48 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG < 1:2511572/50‑1 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG > 1:3709145/1‑50 GGCATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG < 1:1417236/50‑1 GGCATCGATAGTCAGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAG < 1:6065528/50‑1 CATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCC < 1:6303586/50‑1 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:200413/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:5730737/1‑50 ATCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCC > 1:5707548/1‑50 TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCG < 1:4898748/50‑1 TCGATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAACCCG < 1:6647906/50‑1 GATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCA > 1:532021/1‑50 ATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:6775207/1‑50 TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:5700117/1‑49 TAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > 1:5158780/1‑49 TTTTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/263463‑263513‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAT > NC_000913/325411‑325458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |