| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 125 [0] | [0] 124 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 120 (1.280) | 63/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
Only 100 of 124 total aligned reads displayed.
ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCA > NC_000913/325363‑325460 | ttctaccagaaaattcacggcatcggctagggtgataccggcatcgatAg > 1:1473004‑M2/49‑50 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGt < 1:1838084‑M2/3‑1 (MQ=255) taccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCt > 1:3582600‑M2/46‑50 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc < 1:614564‑M2/4‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCt < 1:7281750‑M2/5‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCt < 1:5854405‑M2/5‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTg < 1:6280052‑M2/6‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGt < 1:5264040‑M2/7‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGt < 1:5557216‑M2/7‑1 (MQ=255) cagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTa > 1:3731397‑M2/43‑50 (MQ=255) cagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTa < 1:7290125‑M2/8‑1 (MQ=255) cagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTa > 1:3558916‑M2/43‑50 (MQ=255) cagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTa < 1:7118607‑M2/8‑1 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:6218687‑M2/42‑50 (MQ=255) gaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATc < 1:3378496‑M2/10‑1 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:3045327‑M2/40‑48 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:4520902‑M2/40‑48 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:4926751‑M2/40‑48 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt > 1:6955826‑M2/40‑48 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCa < 1:2388188‑M2/11‑1 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCa < 1:5014233‑M2/11‑1 (MQ=255) aaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCa < 1:6744740‑M2/11‑1 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 1:3717976‑M2/39‑50 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg < 1:3438177‑M2/12‑1 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 1:6821554‑M2/39‑50 (MQ=255) aattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAgg < 1:1087481‑M2/13‑1 (MQ=255) aattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 1:5379642‑M2/38‑49 (MQ=255) attcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAgg > 1:305429‑M2/37‑49 (MQ=255) attcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGa < 1:805405‑M2/14‑1 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCCGGaa > 1:6742370‑M2/36‑50 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa < 1:5854767‑M2/15‑1 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa > 1:2814771‑M2/36‑50 (MQ=255) tcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAAt > 1:1440673‑M2/35‑50 (MQ=255) cacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAAt < 1:1600999‑M2/16‑1 (MQ=255) cacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAAt < 1:3658605‑M2/16‑1 (MQ=255) cacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAAt < 1:670557‑M2/16‑1 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg < 1:534014‑M2/17‑1 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGt < 1:6967416‑M2/18‑1 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGt < 1:4572751‑M2/18‑1 (MQ=255) cggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGtt < 1:6638616‑M2/19‑1 (MQ=255) cggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGtt < 1:1064099‑M2/19‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:7263015‑M2/20‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:559722‑M2/20‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:822987‑M2/20‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc > 1:1075994‑M2/31‑50 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:2399536‑M2/20‑1 (MQ=255) gcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCg < 1:6016315‑M2/21‑1 (MQ=255) gcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCg < 1:4763197‑M2/21‑1 (MQ=255) catcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCgg > 1:2865874‑M2/29‑50 (MQ=255) catcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCgg > 1:5427690‑M2/29‑50 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg > 1:3161970‑M2/28‑50 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg > 1:5472193‑M2/28‑50 (MQ=255) tcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt < 1:3888041‑M2/24‑1 (MQ=255) tcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt < 1:2051539‑M2/24‑1 (MQ=255) tcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt < 1:3543866‑M2/24‑1 (MQ=255) cggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt > 1:5997089‑M2/26‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt > 1:3945496‑M2/25‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt < 1:4096469‑M2/25‑1 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt > 1:206320‑M2/25‑49 (MQ=255) tagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa > 1:6155324‑M2/22‑49 (MQ=255) tagggtgataccggcatcgatAGTCTGTACCAGGAATGTTCGGGTTaaa > 1:2748696‑M2/22‑49 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 1:762086‑M2/20‑50 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 1:1236098‑M2/20‑50 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat < 1:6921952‑M2/31‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 1:6614664‑M2/20‑50 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAata < 1:1616683‑M2/30‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAata < 1:26281‑M2/30‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAat < 1:4787197‑M2/29‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAat < 1:4343230‑M2/29‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAat < 1:3036725‑M2/29‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAat < 1:3851598‑M2/29‑1 (MQ=255) ggtgatatcggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 1:2067879‑M2/19‑49 (MQ=255) ggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 1:5668305‑M2/19‑49 (MQ=255) gtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCa < 1:2248635‑M2/33‑1 (MQ=255) tgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg < 1:6708395‑M2/34‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc < 1:2166607‑M2/35‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc > 1:4189513‑M2/15‑49 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc > 1:3973065‑M2/15‑49 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc < 1:2961520‑M2/35‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCa < 1:1142901‑M2/36‑1 (MQ=255) taccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa < 1:5068096‑M2/37‑1 (MQ=255) taccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa < 1:6342142‑M2/37‑1 (MQ=255) accggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa > 1:1445713‑M2/13‑49 (MQ=255) accggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa > 1:1685825‑M2/13‑49 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaa < 1:3451664‑M2/39‑1 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa < 1:655040‑M2/38‑1 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa < 1:4393339‑M2/38‑1 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaaa < 1:3377976‑M2/40‑1 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaaa < 1:4792956‑M2/40‑1 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg < 1:1417236‑M2/41‑1 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg > 1:3709145‑M2/10‑50 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc < 1:6239760‑M2/44‑1 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc > 1:200413‑M2/7‑50 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc > 1:5707548‑M2/7‑50 (MQ=255) atcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGccc > 1:5730737‑M2/7‑50 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg < 1:487064‑M2/45‑1 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg < 1:4898748‑M2/45‑1 (MQ=255) gatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCa > 1:532021‑M2/4‑50 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 1:5700117‑M2/2‑49 (MQ=255) aGTCTGTATCATGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGcatca > 1:7443472/1‑50 (MQ=255) | ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCA > NC_000913/325363‑325460 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |