| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 125 [0] | [0] 124 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 120 (1.280) | 63/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
Only 100 of 125 total aligned reads displayed.
TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263465‑263561 | tttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT < 1:5106788‑M1/49‑1 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgt < 1:5557216‑M1/50‑8 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgt < 1:5264040‑M1/50‑8 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtct < 1:5854405‑M1/48‑6 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtct < 1:7281750‑M1/48‑6 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtc < 1:614564‑M1/47‑5 (MQ=255) cAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgta > 1:3558916‑M1/1‑42 (MQ=255) cAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgta < 1:7118607‑M1/50‑9 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:6218687‑M1/1‑41 (MQ=255) gAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatc < 1:3378496‑M1/50‑11 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatca < 1:5014233‑M1/50‑12 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatca < 1:2388188‑M1/50‑12 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:3045327‑M1/1‑39 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:4926751‑M1/1‑39 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:6955826‑M1/1‑39 (MQ=255) aaaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat > 1:4520902‑M1/1‑39 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:3717976‑M1/1‑38 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:6821554‑M1/1‑38 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 1:3877082‑M1/50‑14 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 1:1087481‑M1/50‑14 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 1:1520128‑M1/50‑14 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:5379642‑M1/1‑37 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagga < 1:2129778‑M1/50‑15 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagga < 1:805405‑M1/50‑15 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagga < 1:7293214‑M1/50‑15 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatccggaa > 1:6742370‑M1/1‑35 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa < 1:5854767‑M1/50‑16 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa > 1:2814771‑M1/1‑35 (MQ=255) tCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaat > 1:1440673‑M1/1‑34 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaat < 1:670557‑M1/49‑17 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaat < 1:3658605‑M1/49‑17 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaat < 1:1600999‑M1/49‑17 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgt < 1:4572751‑M1/50‑19 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg < 1:534014‑M1/49‑18 (MQ=255) cGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgtt < 1:1064099‑M1/50‑20 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:822987‑M1/50‑21 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:7263015‑M1/50‑21 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:559722‑M1/50‑21 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc > 1:1075994‑M1/1‑30 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcg < 1:6016315‑M1/50‑22 (MQ=255) cATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgg > 1:5427690‑M1/1‑28 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:3161970‑M1/1‑27 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg < 1:4122286‑M1/50‑24 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:5472193‑M1/1‑27 (MQ=255) tCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt < 1:2051539‑M1/50‑25 (MQ=255) tCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt < 1:3888041‑M1/50‑25 (MQ=255) tCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt < 1:3543866‑M1/50‑25 (MQ=255) cGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt > 1:5997089‑M1/1‑25 (MQ=255) cGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt > 1:1971424‑M1/1‑25 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:206320‑M1/1‑24 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt < 1:4096469‑M1/49‑26 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:3945496‑M1/1‑24 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:3201275‑M1/1‑24 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:6155324‑M1/1‑21 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtaccaggaatgttcgggttaaa > 1:2748696‑M1/1‑21 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:762086‑M1/1‑19 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:6614664‑M1/1‑19 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat < 1:6921952‑M1/50‑32 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata < 1:26281‑M1/49‑31 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata < 1:1616683‑M1/49‑31 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaat < 1:3036725‑M1/48‑30 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaat < 1:4787197‑M1/48‑30 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaat < 1:4343230‑M1/48‑30 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaat < 1:1257278‑M1/48‑30 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaat < 1:3851598‑M1/48‑30 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:5668305‑M1/1‑18 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:3703784‑M1/1‑18 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatca < 1:2248635‑M1/50‑34 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:6708395‑M1/50‑35 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:4876926‑M1/50‑35 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:3489576‑M1/1‑16 (MQ=255) gATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:4534800‑M1/1‑15 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca < 1:1142901‑M1/50‑37 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagc > 1:4189513‑M1/1‑14 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagc < 1:2166607‑M1/49‑36 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagc < 1:2961520‑M1/49‑36 (MQ=255) tACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa < 1:6342142‑M1/50‑38 (MQ=255) tACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa < 1:5068096‑M1/50‑38 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:1445713‑M1/1‑12 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:1685825‑M1/1‑12 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaa < 1:3451664‑M1/50‑40 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa < 1:4393339‑M1/49‑39 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa < 1:655040‑M1/49‑39 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaa < 1:4792956‑M1/50‑41 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaa < 1:3377976‑M1/50‑41 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:2905505‑M1/1‑10 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag > 1:3709145‑M1/1‑9 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag < 1:2511572‑M1/50‑42 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag < 1:1417236‑M1/50‑42 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc > 1:7076724‑M1/1‑7 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:6303586‑M1/50‑44 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:200413‑M1/1‑6 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc < 1:6239760‑M1/50‑45 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:5707548‑M1/1‑6 (MQ=255) aTCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagccc > 1:5730737‑M1/1‑6 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg < 1:487064‑M1/50‑46 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaaacccg < 1:6647906‑M1/50‑46 (MQ=255) gATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgca > 1:532021‑M1/1‑3 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:6775207‑M1/1‑2 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:5700117‑M1/1‑1 (MQ=255) | TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263465‑263561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |