| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 108 [0] | [0] 101 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 98 (1.020) | 60/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 108 total aligned reads displayed.
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTA < 1:4129269/50‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:2587553/1‑49TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:1138554/1‑49TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:3057432/1‑49TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:4143890/1‑49 TTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:6178404/1‑48 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:7205463/1‑50 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA < 1:5708020/49‑1 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA < 1:3588831/49‑1 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG > 1:6741837/1‑50 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:3079663/49‑1 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCG < 1:6014094/50‑1 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:3213956/1‑48 ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:560751/1‑47 ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:7114736/1‑47 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAG < 1:4817472/49‑1 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAG < 1:2411278/49‑1 TGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:4527929/1‑49 TGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:1380582/1‑49 GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA > 1:5931494/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:7128890/50‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:7136666/50‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:1015202/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT < 1:10069/48‑1 TATAACCGGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGA < 1:6992481/46‑1 ATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:4809521/1‑49 ATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:4527096/1‑49 AACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:2102373/1‑49 AACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:3739370/1‑49 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:2594018/50‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:5098183/50‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:1961356/1‑48 TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT > 1:2377300/1‑50 TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT > 1:4240556/1‑50 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC < 1:658386/50‑1 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT < 1:6404622/48‑1 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT < 1:5498355/48‑1 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCC < 1:7175329/50‑1 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC > 1:7334929/1‑49 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC > 1:1528820/1‑49 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC > 1:383966/1‑49 TGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA > 1:246743/1‑50 TGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA > 1:7208233/1‑50 TGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA < 1:772483/50‑1 GTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT > 1:3956922/1‑50 GTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT > 1:7130427/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG < 1:3814717/50‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG < 1:1419452/50‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:2306045/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:1284445/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:339837/1‑50 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGC < 1:6706639/49‑1 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGC < 1:4750745/49‑1 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:5679253/1‑48 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:5142903/1‑48 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG < 1:4032486/50‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:1214210/49‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:6508255/49‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC > 1:1489944/1‑50 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC > 1:2358064/1‑50 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC < 1:5488562/50‑1 ACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG > 1:5588057/1‑50 CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT < 1:4733864/50‑1 CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT < 1:6048671/50‑1 CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT < 1:4010798/50‑1 CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG < 1:3361683/49‑1 TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC > 1:5797090/1‑50 TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC > 1:227302/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG > 1:901202/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG > 1:261276/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG < 1:5208652/50‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC < 1:2163046/49‑1 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG > 1:345648/1‑50 TCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG > 1:100573/1‑50 TCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG > 1:296549/1‑50 TCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG > 1:6741119/1‑50 CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG < 1:7069074/49‑1 TCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG > 1:2381711/1‑48 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG > 1:632850/1‑50 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG > 1:3530055/1‑50 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAA < 1:6031057/49‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAA < 1:2663283/49‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGA < 1:356416/48‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG < 1:4062229/47‑1 GGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT > 1:5956403/1‑50 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT < 1:1399755/50‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT < 1:2344122/50‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT < 1:2227451/49‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG < 1:1596946/50‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG < 1:4388961/50‑1 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG > 1:5759325/1‑50 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG > 1:5337550/1‑50 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG < 1:1341112/50‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG > 1:2886445/1‑50 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:2117168/49‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:3958560/49‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:5432951/49‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:3029468/50‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > 1:6789408/1‑50 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:878991/50‑1 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |