Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,555,491 Δ41,523 bp [yjiC]–lgoD 37 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4555491 4597013 41523 108 [0] [0] 101 [yjiC]–lgoD [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 45554900 (0.000)98 (1.020) 60/96 0.0 100% coding (831/831 nt) yjiC uncharacterized protein YjiC
?NC_000913 4597014 = 0 (0.000)intergenic (+2/+136) lgoD/opgB L‑galactonate oxidoreductase/phosphoglycerol transferase I

Only 100 of 108 total aligned reads displayed.

TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG  >  NC_000913/4555442‑4555539
                                                |                                                 
tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTa                                                  <  1:4129269‑M1/50‑2 (MQ=255)
tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   >  1:2587553‑M1/1‑49 (MQ=255)
tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   >  1:1138554‑M1/1‑49 (MQ=255)
tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   >  1:3057432‑M1/1‑49 (MQ=255)
tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   >  1:4143890‑M1/1‑49 (MQ=255)
 ttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT                                                   >  1:6178404‑M1/1‑48 (MQ=255)
  tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag                                                >  1:7205463‑M1/1‑47 (MQ=255)
  tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaa                                                 <  1:5708020‑M1/49‑3 (MQ=255)
  tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaa                                                 <  1:3588831‑M1/49‑3 (MQ=255)
   aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg                                               >  1:6741837‑M1/1‑46 (MQ=255)
   aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag                                                <  1:3079663‑M1/49‑4 (MQ=255)
     cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcg                                             <  1:6014094‑M1/50‑7 (MQ=255)
      tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc                                              >  1:3213956‑M1/1‑43 (MQ=255)
       aTCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc                                              >  1:560751‑M1/1‑42 (MQ=255)
       aTCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc                                              >  1:7114736‑M1/1‑42 (MQ=255)
        tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgag                                           <  1:4817472‑M1/49‑9 (MQ=255)
        tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgag                                           <  1:2411278‑M1/49‑9 (MQ=255)
          tGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat                                         >  1:4527929‑M1/1‑39 (MQ=255)
          tGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat                                         >  1:1380582‑M1/1‑39 (MQ=255)
           gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta                                       >  1:5931494‑M1/1‑38 (MQ=255)
            tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat                                      <  1:7128890‑M1/50‑14 (MQ=255)
            tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat                                      <  1:7136666‑M1/50‑14 (MQ=255)
            tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat                                      >  1:1015202‑M1/1‑37 (MQ=255)
            tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatt                                        <  1:10069‑M1/48‑12 (MQ=255)
            tataACCGGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgaga                                          <  1:6992481‑M1/46‑10 (MQ=255)
             ataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat                                      >  1:4809521‑M1/1‑36 (MQ=255)
             ataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat                                      >  1:4527096‑M1/1‑36 (MQ=255)
               aaCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta                                    >  1:2102373‑M1/1‑34 (MQ=255)
               aaCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta                                    >  1:3739370‑M1/1‑34 (MQ=255)
                aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaa                                  <  1:2594018‑M1/50‑18 (MQ=255)
                aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaa                                  <  1:5098183‑M1/50‑18 (MQ=255)
                aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta                                    >  1:1961356‑M1/1‑33 (MQ=255)
                   tGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt                               >  1:2377300‑M1/1‑30 (MQ=255)
                   tGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt                               >  1:4240556‑M1/1‑30 (MQ=255)
                     aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc                             <  1:658386‑M1/50‑23 (MQ=255)
                     aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt                               <  1:6404622‑M1/48‑21 (MQ=255)
                     aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt                               <  1:5498355‑M1/48‑21 (MQ=255)
                      aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcc                            <  1:7175329‑M1/50‑24 (MQ=255)
                      aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc                             >  1:7334929‑M1/1‑27 (MQ=255)
                      aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc                             >  1:1528820‑M1/1‑27 (MQ=255)
                      aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc                             >  1:383966‑M1/1‑27 (MQ=255)
                       tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca                           >  1:246743‑M1/1‑26 (MQ=255)
                       tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca                           >  1:7208233‑M1/1‑26 (MQ=255)
                       tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca                           <  1:772483‑M1/50‑25 (MQ=255)
                        gTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat                          >  1:3956922‑M1/1‑25 (MQ=255)
                        gTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat                          >  1:7130427‑M1/1‑25 (MQ=255)
                         ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg                         <  1:3814717‑M1/50‑27 (MQ=255)
                         ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg                         <  1:1419452‑M1/50‑27 (MQ=255)
                         ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg                         >  1:2306045‑M1/1‑24 (MQ=255)
                         ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg                         >  1:1284445‑M1/1‑24 (MQ=255)
                         ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg                         >  1:339837‑M1/1‑24 (MQ=255)
                           aGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgc                        <  1:6706639‑M1/49‑28 (MQ=255)
                           aGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgc                        <  1:4750745‑M1/49‑28 (MQ=255)
                           aGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg                         >  1:5679253‑M1/1‑22 (MQ=255)
                           aGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg                         >  1:5142903‑M1/1‑22 (MQ=255)
                            gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcag                      <  1:4032486‑M1/50‑30 (MQ=255)
                            gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca                       <  1:1214210‑M1/49‑29 (MQ=255)
                            gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca                       <  1:6508255‑M1/49‑29 (MQ=255)
                             tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc                     >  1:1489944‑M1/1‑20 (MQ=255)
                             tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc                     >  1:2358064‑M1/1‑20 (MQ=255)
                             tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc                     <  1:5488562‑M1/50‑31 (MQ=255)
                              aCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg                    >  1:5588057‑M1/1‑19 (MQ=255)
                               cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgt                   <  1:4733864‑M1/50‑33 (MQ=255)
                               cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgt                   <  1:6048671‑M1/50‑33 (MQ=255)
                               cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgt                   <  1:4010798‑M1/50‑33 (MQ=255)
                               cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg                    <  1:3361683‑M1/49‑32 (MQ=255)
                                tCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc                  >  1:5797090‑M1/1‑17 (MQ=255)
                                tCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc                  >  1:227302‑M1/1‑17 (MQ=255)
                                  aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccg                >  1:901202‑M1/1‑15 (MQ=255)
                                  aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccg                >  1:261276‑M1/1‑15 (MQ=255)
                                  aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccg                <  1:5208652‑M1/50‑36 (MQ=255)
                                  aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc                 <  1:2163046‑M1/49‑35 (MQ=255)
                                   ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg               >  1:345648‑M1/1‑14 (MQ=255)
                                    tcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg              >  1:100573‑M1/1‑13 (MQ=255)
                                    tcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg              >  1:296549‑M1/1‑13 (MQ=255)
                                    tcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg              >  1:6741119‑M1/1‑13 (MQ=255)
                                     cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg              <  1:7069074‑M1/49‑38 (MQ=255)
                                       tcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg             >  1:2381711‑M1/1‑10 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaag          >  1:632850‑M1/1‑9 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaag          >  1:3530055‑M1/1‑9 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaa           <  1:6031057‑M1/49‑41 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaa           <  1:2663283‑M1/49‑41 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggga            <  1:356416‑M1/48‑40 (MQ=255)
                                        ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg             <  1:4062229‑M1/47‑39 (MQ=255)
                                           ggTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagtgt       >  1:5956403‑M1/1‑6 (MQ=255)
                                            gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt      <  1:1399755‑M1/50‑46 (MQ=255)
                                            gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt      <  1:2344122‑M1/50‑46 (MQ=255)
                                            gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgt       <  1:2227451‑M1/49‑45 (MQ=255)
                                             tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg     <  1:1596946‑M1/50‑47 (MQ=255)
                                             tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg     <  1:4388961‑M1/50‑47 (MQ=255)
                                              agtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg    >  1:5759325‑M1/1‑3 (MQ=255)
                                              agtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg    >  1:5337550‑M1/1‑3 (MQ=255)
                                               gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg   <  1:1341112‑M1/50‑49 (MQ=255)
                                               gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg   >  1:2886445‑M1/1‑2 (MQ=255)
                                               gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg    <  1:2117168‑M1/49‑48 (MQ=255)
                                               gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg    <  1:3958560‑M1/49‑48 (MQ=255)
                                               gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg    <  1:5432951‑M1/49‑48 (MQ=255)
                                                taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc  <  1:3029468‑M1/50‑50 (MQ=255)
                                                taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc  >  1:6789408‑M1/1‑1 (MQ=255)
                                                taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc  <  1:878991‑M1/50‑50 (MQ=255)
                                                |                                                 
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG  >  NC_000913/4555442‑4555539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.