| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 108 [0] | [0] 101 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 98 (1.020) | 60/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 101 total aligned reads displayed.
GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4596965‑4597062 | tttagctatctgtataacctgaatgttagtactcattcttcctggtagta < 1:4129269‑M2/1‑1 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtaa < 1:3588831‑M2/2‑1 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtaa < 1:5708020‑M2/2‑1 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtAAg > 1:7205463‑M2/48‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg > 1:6741837‑M2/47‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 1:3079663‑M2/3‑1 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGCg < 1:6014094‑M2/6‑1 (MQ=255) tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:3213956‑M2/44‑48 (MQ=255) tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:59912‑M2/44‑48 (MQ=255) atctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:7114736‑M2/43‑47 (MQ=255) atctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:560751‑M2/43‑47 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGCgag < 1:2411278‑M2/8‑1 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGCgag < 1:4817472‑M2/8‑1 (MQ=255) tgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat > 1:4527929‑M2/40‑49 (MQ=255) tgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat > 1:1380582‑M2/40‑49 (MQ=255) gtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta > 1:5931494‑M2/39‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat < 1:7128890‑M2/13‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat < 1:7136666‑M2/13‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:1015202‑M2/38‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatt < 1:10069‑M2/11‑1 (MQ=255) tataaccggaatgttagtactcattcttcctggtagtAAGGCgaga < 1:6992481‑M2/9‑1 (MQ=255) ataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:4527096‑M2/37‑49 (MQ=255) ataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:4809521‑M2/37‑49 (MQ=255) aacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta > 1:2102373‑M2/35‑49 (MQ=255) aacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta > 1:3739370‑M2/35‑49 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta > 1:1961356‑M2/34‑48 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaaa < 1:2594018‑M2/17‑1 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaaa < 1:5098183‑M2/17‑1 (MQ=255) cctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAg > 1:4124302‑M2/33‑50 (MQ=255) tgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt > 1:2377300‑M2/31‑50 (MQ=255) tgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt > 1:4240556‑M2/31‑50 (MQ=255) gaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg > 1:3419940‑M2/30‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt < 1:6404622‑M2/20‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt < 1:5498355‑M2/20‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc < 1:658386‑M2/22‑1 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGcc < 1:7175329‑M2/23‑1 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:7334929‑M2/28‑49 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:1528820‑M2/28‑49 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:383966‑M2/28‑49 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa < 1:772483‑M2/24‑1 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa > 1:7208233‑M2/27‑50 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa > 1:246743‑M2/27‑50 (MQ=255) gttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt > 1:7130427‑M2/26‑50 (MQ=255) gttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt > 1:3956922‑M2/26‑50 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:2306045‑M2/25‑50 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg < 1:3814717‑M2/26‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:1284445‑M2/25‑50 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:339837‑M2/25‑50 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg < 1:1419452‑M2/26‑1 (MQ=255) agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:5679253‑M2/23‑48 (MQ=255) agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:5142903‑M2/23‑48 (MQ=255) agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGc < 1:6706639‑M2/27‑1 (MQ=255) agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGc < 1:4750745‑M2/27‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:1214210‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:6508255‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAg < 1:4032486‑M2/29‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc > 1:2358064‑M2/21‑50 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc < 1:5488562‑M2/30‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc > 1:1489944‑M2/21‑50 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc > 1:2457307‑M2/21‑50 (MQ=255) actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg > 1:5588057‑M2/20‑50 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg < 1:3361683‑M2/31‑1 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt < 1:6048671‑M2/32‑1 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt < 1:4010798‑M2/32‑1 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt < 1:4733864‑M2/32‑1 (MQ=255) tcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc > 1:227302‑M2/18‑50 (MQ=255) tcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc > 1:5797090‑M2/18‑50 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 1:2163046‑M2/34‑1 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg > 1:261276‑M2/16‑50 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg < 1:5208652‑M2/35‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg > 1:345648‑M2/15‑50 (MQ=255) tcttcctggtagtAAGGCGAGCTTATTAAAGTTGCCATGCAGCGTCCggg > 1:7045684‑M2/14‑50 (MQ=255) tcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 1:296549‑M2/14‑50 (MQ=255) tcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 1:100573‑M2/14‑50 (MQ=255) tcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 1:6741119‑M2/14‑50 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg < 1:7069074‑M2/37‑1 (MQ=255) tcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:5303597‑M2/11‑48 (MQ=255) tcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:2381711‑M2/11‑48 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg < 1:4062229‑M2/38‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGaa < 1:6031057‑M2/40‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGaa < 1:2663283‑M2/40‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGa < 1:356416‑M2/39‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg > 1:632850‑M2/10‑50 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg > 1:3530055‑M2/10‑50 (MQ=255) ggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt > 1:5956403‑M2/7‑50 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt < 1:2227451‑M2/44‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:2344122‑M2/45‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:1399755‑M2/45‑1 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg < 1:4388961‑M2/46‑1 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg < 1:1596946‑M2/46‑1 (MQ=255) agtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg > 1:5759325‑M2/4‑50 (MQ=255) agtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg > 1:5337550‑M2/4‑50 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTggg < 1:1341112‑M2/48‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTggg > 1:2886445‑M2/3‑50 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg < 1:5432951‑M2/47‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg < 1:3958560‑M2/47‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg < 1:2117168‑M2/47‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc > 1:6789408‑M2/2‑50 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:3029468‑M2/49‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:878991‑M2/49‑1 (MQ=255) | GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4596965‑4597062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |