BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	167,484	Δ5,964 bp		[fhuA]–fhuB	[fhuA], fhuC, fhuD, fhuB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	167484	173447	5964	117 [0]	[0] 117	[fhuA]–fhuB	[fhuA],fhuC,fhuD,fhuB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 167483	0 (0.000)	115 (1.180)	66/98	0.0	100%	intergenic (+219/‑1)	mrcB/fhuA	peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcB/ferrichrome outer membrane transporter/phage receptor
*	?	NC_000913	173448 =	0 (0.000)	115 (1.180)	66/98	0.0	100%	intergenic (+4/+154)	fhuB/hemL	iron(III) hydroxamate ABC transporter membrane subunit/glutamate‑1‑semialdehyde aminotransferase

Only 100 of 117 total aligned reads displayed.

ATAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATC  >  NC_000913/167434‑167531

ataatCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCa                                                  >  1:816424/1‑50 (MQ=255)

ataatCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCa                                                  >  1:4110789/1‑50 (MQ=255)

 tAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAt                                                 <  1:1350826‑M1/50‑2 (MQ=255)

 tAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAt                                                 <  1:5350362‑M1/50‑2 (MQ=255)

 tAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAt                                                 <  1:2760511‑M1/50‑2 (MQ=255)

 tAATCATTCTCGGTTACGTTATCATTCACTTTACATCAGAGATATACCAt                                                 <  1:3663412‑M1/50‑2 (MQ=255)

  aaTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAtt                                                >  1:1572800‑M1/1‑48 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc                                               >  1:4694655‑M1/1‑47 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc                                               <  1:5884232‑M1/50‑4 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc                                               >  1:7293765‑M1/1‑47 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttc                                               <  1:20084‑M1/50‑4 (MQ=255)

   aTCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAtt                                                <  1:6591288‑M1/49‑3 (MQ=255)

    tCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcc                                              <  1:4562140‑M1/50‑5 (MQ=255)

    tCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcc                                              <  1:1324221‑M1/50‑5 (MQ=255)

     cATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca                                             >  1:3279415‑M1/1‑45 (MQ=255)

     cATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca                                             >  1:1965735‑M1/1‑45 (MQ=255)

     cATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca                                             >  1:5864853‑M1/1‑45 (MQ=255)

      aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccat                                            <  1:7086572‑M1/50‑7 (MQ=255)

      aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttcca                                             <  1:1723991‑M1/49‑6 (MQ=255)

      aTTCTCGTTTACGTTATCATTCACTTTACATCAGAGATACACCAttcca                                             <  1:6033335‑M1/49‑6 (MQ=255)

       ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata                                           >  1:7386767‑M1/1‑43 (MQ=255)

       ttCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccata                                           >  1:7127090‑M1/1‑43 (MQ=255)

         ctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatat                                          <  1:356665‑M1/49‑9 (MQ=255)

         ctcGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatat                                          <  1:6579439‑M1/49‑9 (MQ=255)

           cGTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac                                       >  1:5030817‑M1/1‑39 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacg                                      >  1:6556294‑M1/1‑38 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacg                                      >  1:417238‑M1/1‑38 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacg                                      <  1:3948798‑M1/50‑13 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacg                                      >  1:2769757‑M1/1‑38 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataac                                       <  1:1828341‑M1/49‑12 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataa                                        <  1:3869634‑M1/48‑11 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatataa                                        <  1:5624047‑M1/48‑11 (MQ=255)

            gTTTACGTTATCATTCACTTTACATCAGAGATATACCAttccatata                                         <  1:3136157‑M1/47‑10 (MQ=255)

             tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg                                     >  1:5581701‑M1/1‑37 (MQ=255)

             tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg                                     <  1:5343362‑M1/50‑14 (MQ=255)

             tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg                                     <  1:5198547‑M1/50‑14 (MQ=255)

             tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg                                     >  1:6458736‑M1/1‑37 (MQ=255)

             tttACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacgg                                     <  1:478845‑M1/50‑14 (MQ=255)

               tACGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggcc                                   >  1:2364358‑M1/1‑35 (MQ=255)

                aCGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccc                                  >  1:5469047‑M1/1‑34 (MQ=255)

                aCGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggcc                                   <  1:4731302‑M1/49‑16 (MQ=255)

                 cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccct                                 <  1:1317707‑M1/50‑18 (MQ=255)

                 cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccc                                  <  1:12130‑M1/49‑17 (MQ=255)

                 cGTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccc                                  <  1:735191‑M1/49‑17 (MQ=255)

                  gTTATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                >  1:1523490‑M1/1‑32 (MQ=255)

                   ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctgt                               <  1:4849050‑M1/50‑20 (MQ=255)

                   ttATCATTCACTTTACATCAGAGATATACCAttccatataacggccctg                                >  1:3972328‑M1/1‑31 (MQ=255)

                     aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                             >  1:5507460‑M1/1‑29 (MQ=255)

                     aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta                              <  1:4632556‑M1/49‑21 (MQ=255)

                     aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta                              <  1:1162987‑M1/49‑21 (MQ=255)

                     aTCATTCACTTTACATCAGAGATATACCAttccatataacggccctgta                              <  1:1906374‑M1/49‑21 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                             <  1:1935479‑M1/49‑22 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                             <  1:6279886‑M1/49‑22 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                             <  1:6256154‑M1/49‑22 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                             <  1:3635951‑M1/49‑22 (MQ=255)

                      tCATTCACTTTACATCAGAGATATACCAttccatataacggccctgtac                             <  1:5373557‑M1/49‑22 (MQ=255)

                       cATTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgc                           >  1:4498014‑M1/1‑27 (MQ=255)

                        aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcc                          <  1:6502583‑M1/50‑25 (MQ=255)

                        aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcc                          >  1:2243590‑M1/1‑26 (MQ=255)

                        aTTCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcc                          >  1:2427077‑M1/1‑26 (MQ=255)

                         ttCACTTTACATCAGAGATATACCAttccatataacggccctgtacgcct                         <  1:6997900‑M1/50‑26 (MQ=255)

                         ttCACTTTACATAAGAGATATACCAttccatataacggccctgtacgcct                         >  1:714757‑M1/1‑25 (MQ=255)

                           cACTTTACATCAGAGATATACCAttccatataacggccctgtacgcctg                        <  1:1567403‑M1/49‑27 (MQ=255)

                            aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga                      >  1:3645637‑M1/1‑22 (MQ=255)

                            aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgga                      >  1:5508730‑M1/1‑22 (MQ=255)

                            aCTTTACATCAGAGATATACCAttccatataacggccctgtacgcctgg                       <  1:6564977‑M1/49‑28 (MQ=255)

                             cTTTACATCAGAGATATACCAttccatataacggccctgtacgcctggac                     <  1:3403280‑M1/50‑30 (MQ=255)

                              tttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                    >  1:2100389‑M1/1‑20 (MQ=255)

                              tttACATCAGAGATATACCAttccatataacggccctgtacgcctagacg                    >  1:4079727‑M1/1‑20 (MQ=255)

                               ttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                    >  1:3709310‑M1/1‑19 (MQ=255)

                               ttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                    >  1:2343904‑M1/1‑19 (MQ=255)

                               ttACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                    >  1:482467‑M1/1‑19 (MQ=255)

                                tACATCAGAGATATACCAttccatataacggccctgtacgcctggacgga                  >  1:1546718‑M1/1‑18 (MQ=255)

                                tACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                    <  1:1018435‑M1/48‑31 (MQ=255)

                                tACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                    <  1:2287135‑M1/48‑31 (MQ=255)

                                tACATCAGAGATATACCAttccatataacggccctgtacgcctggacg                    <  1:2197272‑M1/48‑31 (MQ=255)

                                 aCATCAGAGATATACCAttccatataacggccctgtacgcctggacgga                  <  1:583371‑M1/49‑33 (MQ=255)

                                 aCATCAGAGATATACCAttccatataacggccctgtacgcctggacgga                  <  1:6474455‑M1/49‑33 (MQ=255)

                                  cATCAGAGATATACCAttccatataacggccctgtacgcctggacggat                 >  1:7140532‑M1/1‑16 (MQ=255)

                                   aTCAGAGATATACCAttccatataacggccctgtacgcctggacggataa               <  1:249742‑M1/50‑36 (MQ=255)

                                    tCAGAGATATACCAttccatataacggccctgtacgcctggacggataaa              <  1:657381‑M1/50‑37 (MQ=255)

                                      agagATATACCAttccatataacggccctgtacgcctggacggataaagc            >  1:4896302‑M1/1‑12 (MQ=255)

                                      agagATATACCAttccatataacggccctgtacgcctggacggataaagc            <  1:3261063‑M1/50‑39 (MQ=255)

                                      agagATATACCAttccatataacggccctgtacgcctggacggataaagc            >  1:1436312‑M1/1‑12 (MQ=255)

                                      agagATATACCAttccatataacggccctgtacgcctggacggataaag             <  1:6140764‑M1/49‑38 (MQ=255)

                                         gaTATACCAttccatataacggccctgtacgcctggacggataaagcgtt         >  1:5864466‑M1/1‑9 (MQ=255)

                                          atatACCAttccatataacggccctgtacgcctggacggataacgcgtt         >  1:5332088‑M1/1‑8 (MQ=255)

                                          atatACCAttccatataacggccctgtacgcctggacggataaagcgttt        <  1:4785356‑M1/50‑43 (MQ=255)

                                           tataCCAttccatataacggccctgtacgcctggacggataaagcgttta       >  1:7130934‑M1/1‑7 (MQ=255)

                                           tataCCAttccatataacggccctgtacgcctggacggataaagcgttta       <  1:828040‑M1/50‑44 (MQ=255)

                                           tataCCAttccatataacggccctgtacgcctggacggataaagcgttta       >  1:6023704‑M1/1‑7 (MQ=255)

                                           tataCCAttccatataacggccctgtacgcctggacggataaagcgttta       <  1:3286965‑M1/50‑44 (MQ=255)

                                             taCCAttccatataacggccctgtacgcctggacggataaagcgtttacg     >  1:4913706‑M1/1‑5 (MQ=255)

                                             taCCAttccatataacggccctgtacgcctggacggataaagcgtttac      <  1:6311412‑M1/49‑45 (MQ=255)

                                             taCCAttccatataacggccctgtacgcctggacggataaagcgtttac      <  1:3142382‑M1/49‑45 (MQ=255)

                                              aCCAttccatataacggccctgtacgcctggacggataaagcgtttacgc    >  1:2178389‑M1/1‑4 (MQ=255)

                                               ccAttccatataacggccctgtacgcctggacggataaagcgtttacgc    >  1:1872078‑M1/1‑3 (MQ=255)

                                               ccAttccatataacggccctgtacgcctggacggataaagcgtttacgc    >  1:5312890‑M1/1‑3 (MQ=255)

                                                 attccatataacggccctgtacgcctggacggataaagcgtttacgcga  >  1:2827305‑M1/1‑1 (MQ=255)

                                                 attccatataacggccctgtacgcctggacggataaagcgtttacgcga  >  1:3705502‑M1/1‑1 (MQ=255)

ATAATCATTCTCGTTTACGTTATCATTCACTTTACATCAGAGATATACCAATGGCGCGTTCCAAAACTGCTCAGCCAAAACACTCACTGCGTAAAATC  >  NC_000913/167434‑167531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`