Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	687,860	Δ1,185 bp	IS5‑mediated	insH‑3	insH‑3

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	687860	689044	1185	92 [0]	[0] 93	insH‑3	insH‑3

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 687859	0 (0.000)	89 (0.930)	64/96	0.0	100%	noncoding (1187/1195 nt)	IS5	repeat region
	?	NC_000913	689045 =	0 (0.000)					noncoding (1/1195 nt)	IS5	repeat region

TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC  >  NC_000913/687810‑687908                                                  |                                                  ttATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC                                                   <  1:4828561‑M1/50‑1 (MQ=255) ttATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC                                                   <  1:2488808‑M1/50‑1 (MQ=255)  tATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCc                                                  >  1:4902418‑M1/1‑49 (MQ=255)  tATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCc                                                  >  1:4513050‑M1/1‑49 (MQ=255)   aTCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCc                                                  <  1:2891019‑M1/49‑2 (MQ=255)    tCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCct                                                 <  1:5129727‑M1/49‑3 (MQ=255)     cGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCct                                                 >  1:3479132‑M1/1‑46 (MQ=255)     cGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCct                                                 >  1:335780‑M1/1‑46 (MQ=255)      gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              <  1:690093‑M1/50‑6 (MQ=255)      gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  1:729268‑M1/1‑45 (MQ=255)      gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              <  1:1586173‑M1/50‑6 (MQ=255)      gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              <  1:1593017‑M1/50‑6 (MQ=255)       tCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttagg                                             <  1:737006‑M1/50‑7 (MQ=255)         tGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggt                                            >  1:7327645‑M1/1‑42 (MQ=255)           cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaac                                         <  1:1919648‑M1/50‑11 (MQ=255)           cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaac                                         <  1:6899308‑M1/50‑11 (MQ=255)           cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          >  1:6774496‑M1/1‑40 (MQ=255)           cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          <  1:4823251‑M1/49‑10 (MQ=255)           cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggta                                           <  1:2556355‑M1/48‑9 (MQ=255)           cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggta                                           <  1:5386040‑M1/48‑9 (MQ=255)           cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggt                                            <  1:4799296‑M1/47‑8 (MQ=255)           cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggt                                            <  1:6549903‑M1/47‑8 (MQ=255)            aaCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaaca                                        >  1:4196045‑M1/1‑39 (MQ=255)            aaCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaaaa                                        <  1:5287077‑M1/50‑12 (MQ=255)             aCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacat                                       <  1:6503933‑M1/50‑13 (MQ=255)              cTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:2956904‑M1/1‑37 (MQ=255)              cTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      <  1:4123523‑M1/50‑14 (MQ=255)               tttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:1767402‑M1/1‑36 (MQ=255)                 tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattta                                    <  1:4209142‑M1/49‑16 (MQ=255)                 tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattta                                    <  1:1971382‑M1/49‑16 (MQ=255)                  aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagt                                  >  1:470768‑M1/1‑33 (MQ=255)                  aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   <  1:4724384‑M1/49‑17 (MQ=255)                   ttGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtt                                 <  1:2083226‑M1/50‑19 (MQ=255)                   ttGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagt                                  <  1:1367768‑M1/49‑18 (MQ=255)                   ttGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagt                                  <  1:6831827‑M1/49‑18 (MQ=255)                     gtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttg                               >  1:12947‑M1/1‑30 (MQ=255)                     gtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttg                               >  1:2295056‑M1/1‑30 (MQ=255)                     gtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagttt                                <  1:6446022‑M1/49‑20 (MQ=255)                      tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttgg                              >  1:6264020‑M1/1‑29 (MQ=255)                      tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttg                               <  1:7072474‑M1/49‑21 (MQ=255)                       gCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc                             >  1:6968377‑M1/1‑28 (MQ=255)                        cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct                            <  1:3292917‑M1/50‑24 (MQ=255)                        cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc                             <  1:5612326‑M1/49‑23 (MQ=255)                        cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggc                             <  1:123442‑M1/49‑23 (MQ=255)                         aGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggcta                           <  1:2291327‑M1/50‑25 (MQ=255)                         aGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct                            >  1:6372190‑M1/1‑26 (MQ=255)                           tgttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaa                         <  1:4173732‑M1/50‑27 (MQ=255)                           tgttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaa                         <  1:5216025‑M1/50‑27 (MQ=255)                            gttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaat                        >  1:5615929‑M1/1‑23 (MQ=255)                             ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       <  1:1192016‑M1/50‑29 (MQ=255)                             ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaat                        <  1:3758957‑M1/49‑28 (MQ=255)                             ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaat                        <  1:7197301‑M1/49‑28 (MQ=255)                              tgtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       >  1:4291974‑M1/1‑21 (MQ=255)                               gtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgt                      >  1:5304212‑M1/1‑20 (MQ=255)                               gtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgt                      <  1:1204885‑M1/49‑30 (MQ=255)                               gtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgt                      <  1:2492466‑M1/49‑30 (MQ=255)                                tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaa                    <  1:721893‑M1/50‑32 (MQ=255)                                tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaa                    <  1:3293207‑M1/50‑32 (MQ=255)                                tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     <  1:909374‑M1/49‑31 (MQ=255)                                 gCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:277189‑M1/1‑18 (MQ=255)                                  ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaag                  <  1:6862927‑M1/50‑34 (MQ=255)                                  ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaag                  <  1:3994893‑M1/50‑34 (MQ=255)                                  ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaa                   <  1:981430‑M1/49‑33 (MQ=255)                                  ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:2331139‑M1/1‑17 (MQ=255)                                  ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:6835516‑M1/1‑17 (MQ=255)                                    tGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaaga                 >  1:1238759‑M1/1‑15 (MQ=255)                                      ttAGGGAAGGTGCcttgggtaacatttagtttggctaaatgtaaagata               <  1:5153084‑M1/49‑37 (MQ=255)                                      ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              >  1:3247959‑M1/1‑13 (MQ=255)                                       tAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             >  1:6758511‑M1/1‑12 (MQ=255)                                        aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            >  1:3500989‑M1/1‑11 (MQ=255)                                        aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             <  1:5232348‑M1/49‑39 (MQ=255)                                        aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             <  1:6601306‑M1/49‑39 (MQ=255)                                        aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             <  1:6666674‑M1/49‑39 (MQ=255)                                        aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             <  1:4047328‑M1/49‑39 (MQ=255)                                         gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           <  1:1228290‑M1/50‑41 (MQ=255)                                         gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           >  1:3023534‑M1/1‑10 (MQ=255)                                         gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            <  1:1879220‑M1/49‑40 (MQ=255)                                          ggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgct          >  1:260360‑M1/1‑9 (MQ=255)                                          ggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgct          <  1:667796‑M1/50‑42 (MQ=255)                                           gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         <  1:4660040‑M1/50‑43 (MQ=255)                                           gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         <  1:847291‑M1/50‑43 (MQ=255)                                           gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         <  1:6016785‑M1/50‑43 (MQ=255)                                            aaGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgt        >  1:2937969‑M1/1‑7 (MQ=255)                                            aaGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgt        <  1:4676181‑M1/50‑44 (MQ=255)                                              ggTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      <  1:4010557‑M1/50‑46 (MQ=255)                                               gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttt     <  1:3496203‑M1/50‑47 (MQ=255)                                               gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      >  1:446458‑M1/1‑4 (MQ=255)                                               gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      >  1:862467‑M1/1‑4 (MQ=255)                                                tGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttta    <  1:3647145‑M1/50‑48 (MQ=255)                                                 gCcttaggtaacatttagtttggctaaatgtaaagatattgctgttttat   >  1:4476753‑M1/1‑2 (MQ=255)                                                 gCcttaggtaacatttagtttggctaaatgtaaagatattgctgttttat   >  1:70415‑M1/1‑2 (MQ=255)                                                  ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttatt  <  1:4043940‑M1/50‑50 (MQ=255)                                                  |                                                  TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC  >  NC_000913/687810‑687908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑