mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 30.0% | 74.6 / 29.7 | 50 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 23 (0.240) | 6 (0.060) | 6/544 | 8.7 | 13.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 58 (0.630) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4516891 = | 89 (0.930) | 7 (0.080) | 6/544 | 8.7 | 7.5% | coding (827/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator |
| ? | NC_000913 | 4516925 = | 87 (0.940) | coding (793/954 nt) | fecR | anti‑sigma transmembrane signal transducer for ferric citrate transport; periplasmic FecA‑bound ferric citrate sensor and cytoplasmic FecI ECF sigma factor activator | |||||
| * | ? | NC_000913 | = 3355606 | 80 (0.840) | 4 (0.040) | 4/546 | 9.9 | 4.8% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | NC_000913 | = 3355642 | 80 (0.860) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
| * | ? | NC_000913 | 659191 = | 120 (1.260) | 3 (0.030) | 3/536 | 10.5 | 2.5% | intergenic (+41/+60) | tatE/lipA | TatABCE protein translocation system subunit/lipoate synthase |
| ? | NC_000913 | 659221 = | 122 (1.340) | intergenic (+71/+30) | tatE/lipA | TatABCE protein translocation system subunit/lipoate synthase | |||||
| * | ? | NC_000913 | = 3561225 | 100 (1.050) | 3 (0.030) | 3/546 | 10.6 | 3.0% | coding (228/831 nt) | glpG | rhomboid intramembrane serine protease |
| ? | NC_000913 | = 3561234 | 99 (1.070) | coding (219/831 nt) | glpG | rhomboid intramembrane serine protease | |||||
| * | ? | NC_000913 | 3240053 = | 124 (1.300) | 3 (0.030) | 3/546 | 10.6 | 2.6% | coding (110/1245 nt) | sstT | sodium:serine/threonine symporter |
| ? | NC_000913 | 3243689 = | 103 (1.110) | coding (1053/1413 nt) | uxaC | uronate isomerase | |||||
| * | ? | NC_000913 | = 1322629 | 85 (0.890) | 3 (0.030) | 3/556 | 10.7 | 3.5% | coding (318/1563 nt) | trpE | component I of anthranilate synthase |
| ? | NC_000913 | 1322633 = | 82 (0.870) | coding (314/1563 nt) | trpE | component I of anthranilate synthase | |||||
| * | ? | NC_000913 | = 2820032 | 123 (1.290) | 3 (0.030) | 3/562 | 10.8 | 2.3% | coding (1980/2631 nt) | alaS | alanyl‑tRNA synthetase |
| ? | NC_000913 | 2820036 = | 127 (1.330) | coding (1976/2631 nt) | alaS | alanyl‑tRNA synthetase | |||||