mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 34 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4335104 = | 129 (1.270) | 6 (0.060) | 6/392 | NT | 4.9% | coding (487/1644 nt) | eptA | lipid A phosphoethanolamine transferase |
| ? | NC_000913 | 4335511 = | 105 (1.040) | coding (80/1644 nt) | eptA | lipid A phosphoethanolamine transferase | |||||
| * | ? | NC_000913 | 4199318 = | 85 (0.830) | 4 (0.040) | 3/386 | NT | 4.4% | coding (529/672 nt) | nfi | endonuclease V; deoxyinosine 3' endonuclease |
| ? | NC_000913 | 4199417 = | 93 (0.940) | coding (628/672 nt) | nfi | endonuclease V; deoxyinosine 3' endonuclease | |||||
| * | ? | NC_000913 | 4195525 = | 172 (1.690) | 4 (0.040) | 4/376 | NT | 2.7% | coding (575/1896 nt) | thiC | phosphomethylpyrimidine synthase |
| ? | NC_000913 | 4195682 = | 122 (1.260) | coding (418/1896 nt) | thiC | phosphomethylpyrimidine synthase | |||||
| * | ? | NC_000913 | 4171913 = | 62 (0.610) | 5 (0.050) | 5/372 | NT | 4.6% | intergenic (+157/‑144) | rrfB/murB | 5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding |
| ? | NC_000913 | 4172160 = | 151 (1.580) | coding (104/1029 nt) | murB | UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding | |||||
| * | ? | NC_000913 | 4137898 = | 112 (1.100) | 3 (0.030) | 3/374 | NT | 2.7% | intergenic (‑241/+34) | yijF/gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| ? | NC_000913 | 4137925 = | 111 (1.150) | intergenic (‑268/+7) | yijF/gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase | |||||
| * | ? | NC_000913 | 4133604 = | 140 (1.370) | 4 (0.040) | 3/394 | NT | 3.3% | intergenic (+98/‑231) | metF/katG | 5,10‑methylenetetrahydrofolate reductase/catalase‑peroxidase HPI, heme b‑containing |
| ? | NC_000913 | 4133799 = | 95 (0.940) | intergenic (+293/‑36) | metF/katG | 5,10‑methylenetetrahydrofolate reductase/catalase‑peroxidase HPI, heme b‑containing | |||||
| * | ? | NC_000913 | = 4030355 | 131 (1.280) | 4 (0.040) | 4/386 | NT | 3.2% | coding (617/2190 nt) | fadB | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase |
| ? | NC_000913 | = 4030645 | 112 (1.130) | coding (327/2190 nt) | fadB | fused 3‑hydroxybutyryl‑CoA epimerase/delta(3)‑cis‑delta(2)‑trans‑enoyl‑CoA isomerase/enoyl‑CoA hydratase/3‑hydroxyacyl‑CoA dehydrogenase | |||||
| * | ? | NC_000913 | = 3714513 | 94 (0.920) | 4 (0.040) | 4/378 | NT | 4.5% | coding (1882/2334 nt) | bisC | biotin sulfoxide reductase |
| ? | NC_000913 | = 3714545 | 81 (0.830) | coding (1850/2334 nt) | bisC | biotin sulfoxide reductase | |||||
| * | ? | NC_000913 | = 3640591 | 159 (1.560) | 4 (0.040) | 3/352 | NT | 2.7% | intergenic (+46/‑271) | uspA/dtpB | universal stress global response regulator/dipeptide and tripeptide permease B |
| ? | NC_000913 | = 3640569 | 144 (1.590) | intergenic (+24/‑293) | uspA/dtpB | universal stress global response regulator/dipeptide and tripeptide permease B | |||||
| * | ? | NC_000913 | = 3563755 | 125 (1.230) | 4 (0.040) | 4/378 | NT | 3.4% | intergenic (+237/+32) | glpD/yzgL | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding/pseudogene, periplasmic solute binding protein homology |
| ? | NC_000913 | = 3564080 | 105 (1.080) | intergenic (‑75/+54) | yzgL/glgP | pseudogene, periplasmic solute binding protein homology/glycogen phosphorylase | |||||