BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	232549 =	139 (1.030)	21 (0.170)	15/180	9.9	14.6%	coding (624/624 nt)	yafE	putative S‑adenosyl‑L‑methionine‑dependent methyltransferase
*	?	NC_000913	232587 =	117 (0.950)	21 (0.170)	15/180	9.9	14.6%	intergenic (+38/+10)	yafE/mltD	putative S‑adenosyl‑L‑methionine‑dependent methyltransferase/putative membrane‑bound lytic murein transglycosylase D
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 141 total aligned reads displayed.

AGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCC  >  NC_000913/232452‑232647

 gagCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCataaat                                                                                                  >  2:1439385/1‑99 (MQ=255)

  agCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCataaata                                                                                                 >  1:441821/1‑99 (MQ=255)

       aTCGACAGATGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATaaaaaa                                                                                            <  1:2419918/99‑1 (MQ=255)

       aTCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATaaaaaa                                                                                            >  1:1154922/1‑99 (MQ=255)

       aTCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATaaaaaa                                                                                            <  2:1095089/99‑1 (MQ=255)

       aTCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATaaaaaa                                                                                            >  2:3334897/1‑99 (MQ=255)

       aTCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGAACATAAAGCGGCATAAATaaaaaa                                                                                            >  2:680826/1‑99 (MQ=255)

       aTCGACAGAGGTAAGAACGTATTTTGCCTTGCATAATGATGGCTTTTTCACCAATGATATCATCATGGTAGATGCACATAAAGCAaaaaaaaaaaaaaa                                                                                            <  2:2967069/99‑1 (MQ=255)

         cGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATCAAGCGGCTTAAATAAAAAAgg                                                                                          >  2:916260/1‑99 (MQ=255)

         cGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAgg                                                                                          <  2:2521145/99‑1 (MQ=255)

          gACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGc                                                                                         >  2:3353285/1‑99 (MQ=255)

          gACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGc                                                                                         >  2:2251241/1‑99 (MQ=255)

           aCAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTTACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCa                                                                                        >  2:1976691/1‑99 (MQ=255)

           aCAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCa                                                                                        >  2:937643/1‑99 (MQ=255)

           aCAGAGGTGAGAACGTATTGTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGAAAAAAAAAAAAAAAAGGCa                                                                                        <  2:930200/99‑1 (MQ=255)

            cAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCAc                                                                                       <  1:1970937/99‑1 (MQ=255)

                ggTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCggg                                                                                   <  1:347255/99‑1 (MQ=255)

                 gTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCgggg                                                                                  <  1:2114261/99‑1 (MQ=255)

                 gTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCgggg                                                                                  <  2:2513982/99‑1 (MQ=255)

                 gTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCgggg                                                                                  >  2:615644/1‑99 (MQ=255)

                 gTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCgggg                                                                                  >  1:3374972/1‑99 (MQ=255)

                  tGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCggggg                                                                                 >  2:2161139/1‑99 (MQ=255)

                  tGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCggggg                                                                                 >  1:1120660/1‑99 (MQ=255)

                  tGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCggggg                                                                                 >  1:2036480/1‑99 (MQ=255)

                    agaACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGaa                                                                               >  1:2568852/1‑99 (MQ=255)

                    agaACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGaa                                                                               >  1:3412000/1‑99 (MQ=255)

                      aaCGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCCCCGGGGGAATc                                                                             >  1:2868450/1‑99 (MQ=255)

                      aaCGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATc                                                                             >  2:3149180/1‑99 (MQ=255)

                        cGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCgg                                                                           <  1:2570960/99‑1 (MQ=255)

                         gTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGt                                                                          <  1:396533/99‑1 (MQ=255)

                          tATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTg                                                                         <  2:1850093/99‑1 (MQ=255)

                           aTTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATGTCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGc                                                                        <  2:3295350/99‑1 (MQ=255)

                            ttttGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGcc                                                                       >  1:580853/1‑99 (MQ=255)

                            ttttGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGcc                                                                       >  1:1769863/1‑99 (MQ=255)

                                gCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCtttt                                                                   <  1:2211028/99‑1 (MQ=255)

                                gCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCtttt                                                                   >  2:13131/1‑99 (MQ=255)

                                gCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCtttt                                                                   >  2:2309489/1‑99 (MQ=255)

                                  cTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGGTGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTtta                                                                 >  2:1081514/1‑99 (MQ=255)

                                  cTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTtta                                                                 <  1:2399166/99‑1 (MQ=255)

                                   ttGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTttat                                                                >  2:2311735/1‑99 (MQ=255)

                                    tGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTttatt                                                               >  1:705614/1‑99 (MQ=255)

                                     gCAGAATTATTGCTTTTTCACGAGTCATATCAGCATGGTAGATGCACATAAAGCGTGATAAATAAAAAAGGCTCCTGGGGAATCGGGGCCTTTttatga                                                              <  2:2244940/99‑3 (MQ=255)

                                      cAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTtattat                                                             <  1:2038288/99‑1 (MQ=255)

                                        gAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCt                                                           >  1:513363/1‑99 (MQ=255)

                                         aaTGATGGCTTTTTCACTAGTTATAACATGATGGTAAGTGCACATAAGGCGGCATAAATAAAAAAGACACCGGGGGCATCGGTGCCTTTTTAATATCTg                                                          >  2:1036326/1‑99 (MQ=255)

                                         aaTGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTg                                                          <  1:1547186/99‑1 (MQ=255)

                                         aaTGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTg                                                          <  1:834871/99‑1 (MQ=255)

                                           tgatgGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGt                                                        <  1:1267592/99‑1 (MQ=255)

                                            gatgGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGtt                                                       <  2:615778/99‑1 (MQ=255)

                                            gatgGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGtt                                                       <  2:199823/99‑1 (MQ=255)

                                              tgGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGTGGAATCGGTGCCTTTTTATTATCTGGTTTg                                                     >  1:410050/1‑99 (MQ=255)

                                              tgGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTg                                                     >  1:1262106/1‑99 (MQ=255)

                                              tgGCTTTTTCACCAGTGATATCATCATGGTAGATGAACATAAAGCGGCATAAATAAAACAAGCTCCGGGGGAATAGAGGCCTTTTTATTATCTGGttcg                                                     >  2:1552581/1‑97 (MQ=255)

                                                 cTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGTGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCa                                                  <  1:155679/99‑1 (MQ=255)

                                                 cTTTGTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCa                                                  <  1:2689346/99‑1 (MQ=255)

                                                  tttttCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAg                                                 >  2:1074901/1‑99 (MQ=255)

                                                   ttttCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAgg                                                <  2:479747/99‑1 (MQ=255)

                                                        aCCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCt                                           >  2:1246413/1‑99 (MQ=255)

                                                        aCCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCt                                           >  2:2011860/1‑99 (MQ=255)

                                                         ccAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTg                                          >  1:2337780/1‑99 (MQ=255)

                                                          cAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGTATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTgg                                         >  2:2908078/1‑99 (MQ=255)

                                                           aGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGc                                        >  1:197439/1‑99 (MQ=255)

                                                           aGTGATATCACGGTGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGc                                        <  2:2759912/99‑1 (MQ=255)

                                                             tGATATCATCATGGTAGATGCACATAAAGCGTCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAt                                      >  1:224637/1‑99 (MQ=255)

                                                             tGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAt                                      <  2:2640020/99‑1 (MQ=255)

                                                             tGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAt                                      >  2:2462928/1‑99 (MQ=255)

                                                              gATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAtg                                     <  1:1011659/99‑1 (MQ=255)

                                                               atatCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAtgt                                    >  2:1041176/1‑99 (MQ=255)

                                                                tatCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAtgtt                                   >  1:1778558/1‑99 (MQ=255)

                                                                  tcatcaTGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAtgttgt                                 >  2:2688225/1‑99 (MQ=255)

                                                                  tcatcaTGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTATTATTATCTGGTTTGTCCGGCATCTGGCAtgttgt                                 >  2:2886746/1‑99 (MQ=255)

                                                                    atcatGGTAGAGGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAtgttgttg                               <  2:1704048/99‑1 (MQ=255)

                                                                     tcatGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCAtgttgttgt                              >  2:499107/1‑99 (MQ=255)

                                                                       atGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGttt                            >  2:3043433/1‑99 (MQ=255)

                                                                       atGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGttt                            <  1:1931228/99‑1 (MQ=255)

                                                                       atGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGttt                            >  2:2959837/1‑99 (MQ=255)

                                                                         ggTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGttttt                          >  2:1797076/1‑99 (MQ=255)

                                                                         ggTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGttttt                          <  1:2827235/99‑1 (MQ=255)

                                                                         ggTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGttttt                          >  1:799456/1‑99 (MQ=255)

                                                                          gTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTc                         <  1:1437163/99‑1 (MQ=255)

                                                                          gTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTc                         <  1:682701/99‑1 (MQ=255)

                                                                           tAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTca                        <  2:1953175/99‑1 (MQ=255)

                                                                           tAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTca                        <  2:2791716/99‑1 (MQ=255)

                                                                               tGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCacaaa                    >  2:1275462/1‑99 (MQ=255)

                                                                                gCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCacaaac                   <  2:571488/99‑1 (MQ=255)

                                                                                gCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTCGTCAGGAATCTGGCATGTTGTTGTTTTTCacaaac                   >  2:2615059/1‑99 (MQ=255)

                                                                                gCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATAATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCacaaac                   >  2:1686702/1‑99 (MQ=255)

                                                                                 cacaTAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCacaaaca                  >  1:2940905/1‑99 (MQ=255)

                                                                                  acaTAAAGCGGGATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTGTGaaaaacaa                 <  1:212936/99‑1 (MQ=255)

                                                                                  acaTAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCacaaacaa                 <  2:1414260/99‑1 (MQ=255)

                                                                                    aTAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACg               >  1:3345873/1‑99 (MQ=255)

                                                                                    aTAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGAAATCTGGCATGTTGTTGTTTTTCACAAACAACg               >  1:3445510/1‑99 (MQ=255)

                                                                                     tAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGt              <  1:89398/99‑1 (MQ=255)

                                                                                     tAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTGTGAAAaacaacaa              <  2:1771929/99‑3 (MQ=255)

                                                                                     tAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTGTGAAAaacaacaa              <  1:2494304/99‑3 (MQ=255)

                                                                                      aaaGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTc             >  1:2663259/1‑99 (MQ=255)

                                                                                       aaGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCa            >  1:2158293/1‑99 (MQ=255)

                                                                                         gCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGc          <  2:3357181/99‑1 (MQ=255)

                                                                                         gCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGc          <  1:2347891/99‑1 (MQ=255)

                                                                                                 aataaaAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGcc  >  2:154981/1‑99 (MQ=255)

AGAGCGCATCGACAGAGGTGAGAACGTATTTTGCCTTGCAGAATGATGGCTTTTTCACCAGTGATATCATCATGGTAGATGCACATAAAGCGGCATAAATAAAAAAGGCACCGGGGGAATCGGTGCCTTTTTATTATCTGGTTTGTCAGGAATCTGGCATGTTGTTGTTTTTCACAAACAACGTCAGCTTATCGCC  >  NC_000913/232452‑232647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.