mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,917,405 | 0 | A | G | 25.7% | 133.1 / 10.9 | 75 | V287A (GTT→GCT) | atpG | F1 sector of membrane‑bound ATP synthase, gamma subunit |
| * | NC_000913 | 3,917,394 | 0 | A | T | 25.0% | 154.3 / 11.8 | 78 | intergenic (‑20/+7) | atpD/atpG | F1 sector of membrane‑bound ATP synthase, beta subunit/F1 sector of membrane‑bound ATP synthase, gamma subunit |
| * | NC_000913 | 3,917,395 | 0 | A | T | 24.7% | 140.4 / 14.9 | 78 | intergenic (‑21/+6) | atpD/atpG | F1 sector of membrane‑bound ATP synthase, beta subunit/F1 sector of membrane‑bound ATP synthase, gamma subunit |
| Marginal new junction evidence (lowest skew 10 of 78 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 64 (0.780) | 13 (0.180) | 11/262 | 7.9 | 18.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 58 (0.800) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 61 (0.750) | 10 (0.140) | 9/262 | 8.9 | 15.1% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 58 (0.800) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4542683 = | 55 (0.670) | 8 (0.100) | 7/276 | 10.4 | 12.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542997 = | 65 (0.850) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 220064 | 95 (1.160) | 5 (0.060) | 5/280 | 11.9 | 5.4% | intergenic (‑69/+49) | rcsF/metQ | putative outer membrane protein/DL‑methionine transporter subunit |
| ? | NC_000913 | = 220068 | 85 (1.090) | intergenic (‑73/+45) | rcsF/metQ | putative outer membrane protein/DL‑methionine transporter subunit | |||||
| * | ? | NC_000913 | = 274419 | NA (NA) | 7 (0.090) | 5/284 | 12.0 | NA | coding (699/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | NC_000913 | = 274423 | NA (NA) | coding (695/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | NC_000913 | = 4040682 | 78 (0.960) | 11 (0.140) | 5/290 | 12.2 | 12.4% | intergenic (+47/+223) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | NC_000913 | = 4213161 | 79 (0.980) | intergenic (+3/‑72) | rrfE/yjaA | 5S ribosomal RNA of rrnE operon/stress‑induced protein | |||||
| * | ? | NC_000913 | = 4542691 | 56 (0.690) | 4 (0.050) | 4/276 | 12.5 | 6.4% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542987 | 65 (0.850) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4240156 = | NA (NA) | 4 (0.050) | 4/280 | 12.6 | NA | noncoding (1/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 4240189 = | NA (NA) | noncoding (34/37 nt) | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 2937379 = | NA (NA) | 5 (0.060) | 4/280 | 12.6 | NA | intergenic (+22/‑87) | fucI/fucK | L‑fucose isomerase/L‑fuculokinase |
| ? | NC_000913 | 2937403 = | NA (NA) | intergenic (+46/‑63) | fucI/fucK | L‑fucose isomerase/L‑fuculokinase | |||||
| * | ? | NC_000913 | 574487 = | 86 (1.050) | 4 (0.050) | 4/280 | 12.6 | 4.7% | intergenic (+148/+42) | quuD/nmpC | DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage |
| ? | NC_000913 | 574504 = | 81 (1.040) | intergenic (+165/+25) | quuD/nmpC | DLP12 prophage; putative antitermination protein/DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage | |||||