mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 21.9% | 48.9 / 11.0 | 33 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 82 (0.780) | 20 (0.200) | 19/484 | 4.3 | 21.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 70 (0.710) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 84 (0.800) | 21 (0.210) | 17/484 | 4.8 | 22.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 68 (0.690) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 781446 | 85 (0.810) | 3 (0.040) | 3/360 | 8.6 | 4.9% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 781655 = | 56 (0.760) | intergenic (+3/‑430) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913 | 3619259 = | 85 (0.810) | 3 (0.030) | 3/498 | 10.6 | 3.5% | coding (68/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3619479 = | NA (NA) | coding (288/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 729861 = | 28 (0.270) | 3 (0.030) | 3/498 | 10.6 | 5.5% | coding (279/4194 nt) | rhsC | Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3619268 = | 77 (0.760) | coding (77/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | 452941 = | 86 (0.820) | 3 (0.030) | 3/514 | 10.8 | 3.0% | coding (605/1476 nt) | ampG | muropeptide transporter |
| ? | NC_000913 | = 453327 | 109 (1.040) | coding (219/1476 nt) | ampG | muropeptide transporter | |||||
| * | ? | NC_000913 | = 2929267 | 124 (1.180) | 4 (0.040) | 3/516 | 10.9 | 3.2% | coding (1039/1290 nt) | sdaC | putative serine transporter |
| ? | NC_000913 | = 2929276 | 119 (1.130) | coding (1048/1290 nt) | sdaC | putative serine transporter | |||||
| * | ? | NC_000913 | 279163 = | NA (NA) | 74 (0.700) | 3/516 | 10.9 | 51.7% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2760086 | 69 (0.650) | coding (1102/1410 nt) | yfjI | CP4‑57 prophage; uncharacterized protein | |||||