mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 579 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4636324 = | 740 (0.940) | 3 (0.000) | 3/244 | NT | 0.43% | coding (318/690 nt) | creB | response regulator in two‑component regulatory system with CreC |
| ? | NC_000913 | 4636375 = | 685 (0.920) | coding (369/690 nt) | creB | response regulator in two‑component regulatory system with CreC | |||||
| * | ? | NC_000913 | 4628743 = | NA (NA) | 11 (0.010) | 9/244 | NT | 1.6% | noncoding (49/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site |
| ? | NC_000913 | 4628776 = | 656 (0.880) | noncoding (82/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4615680 | 716 (0.910) | 5 (0.010) | 5/242 | NT | 0.72% | coding (1386/1551 nt) | yjjI | DUF3029 family protein, putative glycine radical enzyme |
| ? | NC_000913 | = 4615690 | 706 (0.960) | coding (1376/1551 nt) | yjjI | DUF3029 family protein, putative glycine radical enzyme | |||||
| * | ? | NC_000913 | = 4615251 | 767 (0.970) | 8 (0.010) | 6/246 | NT | 1.1% | coding (293/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme |
| ? | NC_000913 | = 4615269 | 743 (0.990) | coding (275/864 nt) | yjjW | putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | 4607519 = | 731 (0.930) | 3 (0.000) | 3/252 | NT | 0.41% | coding (182/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent |
| ? | NC_000913 | 4607556 = | 748 (0.970) | coding (145/1032 nt) | rsmC | 16S rRNA m(2)G1207 methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913 | 4599652 = | 690 (0.880) | 5 (0.010) | 5/244 | NT | 0.79% | intergenic (‑211/+43) | opgB/yjjA | OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane‑bound) and II (soluble)/putative DUF2501 family periplasmic protein |
| ? | NC_000913 | 4599685 = | 610 (0.820) | intergenic (‑244/+10) | opgB/yjjA | OPG periplasmic biosynthetic phosphoglycerol transferases I (membrane‑bound) and II (soluble)/putative DUF2501 family periplasmic protein | |||||
| * | ? | NC_000913 | = 4592257 | 857 (1.090) | 5 (0.010) | 5/248 | NT | 0.59% | coding (601/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor |
| ? | NC_000913 | = 4592272 | 865 (1.140) | coding (616/1656 nt) | tsr | methyl‑accepting chemotaxis protein I, serine sensor receptor | |||||
| * | ? | NC_000913 | 4586419 = | 943 (1.200) | 3 (0.000) | 3/242 | NT | 0.35% | coding (343/3513 nt) | hsdR | endonuclease R Type I restriction enzyme |
| ? | NC_000913 | 4586490 = | 824 (1.120) | coding (272/3513 nt) | hsdR | endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | 4576863 = | 697 (0.890) | 9 (0.010) | 6/238 | NT | 1.4% | intergenic (+8/+49) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC |
| ? | NC_000913 | 4576890 = | 609 (0.840) | intergenic (+35/+22) | yjiV/mcrC | pseudogene; conserved hypothetical protein/5‑methylcytosine‑specific restriction enzyme McrBC, subunit McrC | |||||
| * | ? | NC_000913 | 4568674 = | 862 (1.090) | 14 (0.020) | 9/250 | NT | 1.7% | intergenic (‑155/‑324) | mdtM/yjiP | multidrug efflux system protein/pseudogene, transposase_31 family protein |
| ? | NC_000913 | 4568703 = | 829 (1.090) | intergenic (‑184/‑295) | mdtM/yjiP | multidrug efflux system protein/pseudogene, transposase_31 family protein | |||||