| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2775212 = | 97 (0.700) | 6 (0.050) | 6/214 | NT | 6.0% | intergenic (+191/‑333) | yfjW/ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913 | 2775230 = | 97 (0.740) | intergenic (+209/‑315) | yfjW/ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related | |||||
GGGCATTTACAGTAGCTATTCACAACTAAATGTTAGATACAAGAGAAGGGATGGGATAGACAGAACCTTTCAGTACGAAAGCCGGTTACGGCACCATTTGCCTACAGTACTCCATTCAACAGCTGCTGGCGCTTCCATGCCGCTGGCTCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2775365‑2775212‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcatGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAATGCCCCTACAAAATGA > NC_000913/2775230‑2775376 GGGCATTTACAGTAGCTATTCACAACTAAATGTTAGATACAAGAGAAGGGATGGGATAGACAGAACCTTTCAGTACGAAAGCCGGTTACGGCACCATTTGCCTACAGTACTCCATTCAACAGCTGCTGGCGCTTCCATGCCGCTGGCTC < 1:441487/149‑1 GGCATTTACAGTAGCTATTCACAACTAAATGTTAGATACAAGAGAAGGGATGGGATAGACAGAACCTTTCAGTACGAAAGCCGGTTACGGCACCATTTGCCTACAGTACTCCATTCAACAGCTGCTGGCGCTTCCATGCCGCTGGCTCG < 4:1189836/149‑1 ATTTACAGTAGCTATTCACAACTAAATGTTAGATACAAGAGAAGGGATGGGATAGACAGAACCTTTCAGTACGAAAGCCGGTTACGGCACCATTTGCCTACAGTACTCCATTCAACAGCTGCTGGCGCTTCCATGCCGCTGGCTCGGCA > 4:813298/1‑149 TAGACAGAACCTTTCAGTACGAAAGCCGGTTACGGCACCATTTGCCTACAGTACTCCATTCAACAGCTGCTGGCGCTTCCATGCCGCTGGCTCGGC > 3:1023197/1‑96 TAGACAGAACCTTTCAGTACGAAAGCCGGTTACGGCACCATTTGCCTACAGTACTCCATTCAACAGCTGCTGGCGCTTCCATGCCGCTGGCTCGGC < 4:1023197/96‑1 TCCATGCCGCTGGCTCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAA < 3:329847/60‑1 TCCATGCCGCTGGCTCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAA > 4:329847/1‑60 CCATGCCGCTGGCTCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCC < 3:259264/67‑1 CCATGCCGCTGGCTCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCC > 4:259264/1‑67 CATGCCGCTGGCTCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTAT > 1:755052/1‑100 CATGCCGCTGGCTCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTAT < 2:755052/100‑1 CGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAATGCCCCTACAAA < 2:441487/149‑1 ATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAATGCCCCTACAAAATGA < 2:1185429/149‑1 GGGCATTTACAGTAGCTATTCACAACTAAATGTTAGATACAAGAGAAGGGATGGGATAGACAGAACCTTTCAGTACGAAAGCCGGTTACGGCACCATTTGCCTACAGTACTCCATTCAACAGCTGCTGGCGCTTCCATGCCGCTGGCTCGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2775365‑2775212‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcatGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAATGCCCCTACAAAATGA > NC_000913/2775230‑2775376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |