BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2775212 =	97 (0.700)	6 (0.050)	6/214	NT	6.0%	intergenic (+191/‑333)	yfjW/ypjI	CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related
*	?	NC_000913	2775230 =	97 (0.740)	6 (0.050)	6/214	NT	6.0%	intergenic (+209/‑315)	yfjW/ypjI	CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related

Only 100 of 121 total aligned reads displayed.

TTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAATGCCCCTACAAAATGAAC  >  NC_000913/2775087‑2775378

ttaaaaaCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAgc                                                                                                                                                 <  4:735979/146‑1 (MQ=255)

     aGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCcag                                                                                                                                            >  3:618624/1‑149 (MQ=255)

        aGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCcagcag                                                                                                                                         >  4:1342075/1‑149 (MQ=255)

                  gTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATg                                                                                                                               >  2:1328636/1‑149 (MQ=255)

                    gAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGcc                                                                                                                                              >  1:130143/1‑132 (MQ=255)

                       gCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                                                <  4:1136879/143‑1 (MQ=255)

                       gCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                                                <  2:1269454/143‑1 (MQ=255)

                       gCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                                                >  1:1269454/1‑143 (MQ=255)

                       gCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                                                >  3:1136879/1‑143 (MQ=255)

                         ggACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACt                                                                                                                        <  1:1328636/149‑1 (MQ=255)

                               tCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACt                                                                                                                        <  2:1334677/143‑1 (MQ=255)

                                 aTACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAGGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGtg                                                                                                                                    <  2:1238455/129‑2 (MQ=255)

                                 aTACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGtt                                                                                                                                    >  1:1238455/1‑129 (MQ=255)

                                   aCCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAAt                                                                                                              <  2:971769/149‑1 (MQ=255)

                                   aCCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAAt                                                                                                              >  2:1458120/1‑149 (MQ=255)

                                            atagacagaacctttcagtacgaaagccggttacggcaccatttgcctacagtactccattcaacagctgctggcgcttccATGCCGAGCCAGCGGCATg                                                                                                                                                      <  2:755052‑M1/19‑1 (MQ=255)

                                            atagacagaacctttcagtacgaaagccggttacggcaccatttgcctacagtactccattcaacagctgctggcgcttccATGCCGAGCCAGCGGCATg                                                                                                                                                      >  1:755052‑M1/82‑100 (MQ=255)

                                                tGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                                                <  1:1026494/118‑1 (MQ=255)

                                                    gTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTg                                                                                                                       >  1:495164/1‑123 (MQ=255)

                                                    gTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTg                                                                                                                       <  2:495164/123‑1 (MQ=255)

                                                     tttttGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                                             <  1:899082/116‑1 (MQ=255)

                                                       tttGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCg                                                                                          <  4:618624/149‑1 (MQ=255)

                                                           tCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGtt                                                                                                                                    <  1:172177/103‑1 (MQ=255)

                                                           tCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGtt                                                                                                                                    >  2:172177/1‑103 (MQ=255)

                                                                 cccATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAAt                                                                                                              >  1:696983/1‑119 (MQ=255)

                                                                 cccATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAAt                                                                                                              <  2:696983/119‑1 (MQ=255)

                                                                  ccATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                                           >  3:1086495/1‑137 (MQ=255)

                                                                  ccATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                                           <  4:1086495/137‑1 (MQ=255)

                                                                  ccATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGt                                                                               >  1:415375/1‑149 (MQ=255)

                                                                    aTACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGtt                                                                              >  3:386961/1‑148 (MQ=255)

                                                                    aTACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGtt                                                                              <  4:386961/148‑1 (MQ=255)

                                                                        cTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGc                                                                                                                  <  3:719032/108‑1 (MQ=255)

                                                                        cTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGc                                                                                                                  >  4:719032/1‑108 (MQ=255)

                                                                         tataTTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCt                                                                        >  1:1185429/1‑149 (MQ=255)

                                                                          atatTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                                                <  3:451102/92‑1 (MQ=255)

                                                                             ttttCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                                             >  2:414460/1‑92 (MQ=255)

                                                                             ttttCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                                             <  1:414460/92‑1 (MQ=255)

                                                                              ggcaccatttgcctacagtactccattcaacagctgctggcgcttccATGCCGAGCCAGCGGCATgg                                                                                                                                                     <  3:259264‑M1/20‑1 (MQ=255)

                                                                               ttCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTatccca                                                                  >  3:1330851/1‑149 (MQ=255)

                                                                                  tgttgtTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                                           <  2:190164/121‑1 (MQ=255)

                                                                                  tgttgtTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTatcccatcc                                                               >  1:670506/1‑149 (MQ=255)

                                                                                   gttgttTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTg                                                                           >  2:1268914/1‑136 (MQ=255)

                                                                                    ttgttTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                                             <  3:5058/85‑1 (MQ=255)

                                                                                    ttgttTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                                             >  4:5058/1‑85 (MQ=255)

                                                                                      ttgcctacagtactccattcaacagctgctggcgcttccATGCCGAGCCAGCGGCATGGa                                                                                                                                                    >  4:329847‑M1/40‑60 (MQ=255)

                                                                                      ttgcctacagtactccattcaacagctgctggcgcttccATGCCGAGCCAGCGGCATGGa                                                                                                                                                    <  3:329847‑M1/21‑1 (MQ=255)

                                                                                      gttTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACt                                                                                      <  2:79270/122‑1 (MQ=255)

                                                                                      gttTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACt                                                                                      >  1:79270/1‑122 (MQ=255)

                                                                                       tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATg                                                                                                                               >  3:658474/1‑80 (MQ=255)

                                                                                       tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                                             <  2:1025690/82‑1 (MQ=255)

                                                                                       tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                                             >  1:1025690/1‑82 (MQ=255)

                                                                                       tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTa                                                                                                                          >  1:253400/1‑85 (MQ=255)

                                                                                       tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTc                                                                             <  1:645118/130‑1 (MQ=255)

                                                                                       tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtct                                                          <  2:415375/149‑1 (MQ=255)

                                                                                       tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtct                                                          >  1:1324744/1‑149 (MQ=255)

                                                                                         tAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACt                                                                                      <  3:705860/119‑1 (MQ=255)

                                                                                         tAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACt                                                                                      >  4:705860/1‑119 (MQ=255)

                                                                                          aaCTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                                           >  4:193949/1‑113 (MQ=255)

                                                                                          aaCTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                                           <  3:193949/113‑1 (MQ=255)

                                                                                          aaCTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCtt                                                       <  2:1324744/149‑1 (MQ=255)

                                                                                            cTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGt                                                     <  1:1458120/149‑1 (MQ=255)

                                                                                              gCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTAt                                                   <  4:1330851/149‑1 (MQ=255)

                                                                                                 aGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTAc                                                                                       <  1:132538/110‑1 (MQ=255)

                                                                                                 aGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTAc                                                                                       >  2:132538/1‑110 (MQ=255)

                                                                                                  gAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTaa                                               <  3:960468/149‑1 (MQ=255)

                                                                                                      tGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCt                                                                            >  4:59724/1‑116 (MQ=255)

                                                                                                      tGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCt                                                                            <  3:59724/116‑1 (MQ=255)

                                                                                                        aGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                                             >  4:600260/1‑65 (MQ=255)

                                                                                                        aGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTa                                         <  2:670506/149‑1 (MQ=255)

                                                                                                          cGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTat                                                                      <  1:1162273/118‑1 (MQ=255)

                                                                                                          cGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTat                                                                      >  2:1162273/1‑118 (MQ=255)

                                                                                                            gTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                                         <  3:1646/129‑1 (MQ=255)

                                                                                                            gTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                                         >  4:1646/1‑129 (MQ=255)

                                                                                                            gTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                                         >  2:1410598/1‑129 (MQ=255)

                                                                                                            gTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                                         <  1:1410598/129‑1 (MQ=255)

                                                                                                               gAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                                         >  1:1445307/1‑126 (MQ=255)

                                                                                                               gAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                                         <  2:1445307/126‑1 (MQ=255)

                                                                                                               gAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTaa                                               <  1:966770/136‑1 (MQ=255)

                                                                                                               gAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTaa                                               >  2:966770/1‑136 (MQ=255)

                                                                                                                 aaaGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTtgt                                    <  3:61461/145‑1 (MQ=255)

                                                                                                                 aaaGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTtgt                                    >  4:61461/1‑145 (MQ=255)

                                                                                                                     ccAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                                           <  1:90497/86‑1 (MQ=255)

                                                                                                                     ccAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                                           >  2:90497/1‑86 (MQ=255)

                                                                                                                      cAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAg                              >  3:1259170/1‑146 (MQ=255)

                                                                                                                      cAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAg                              <  4:1259170/146‑1 (MQ=255)

                                                                                                                          tccatgccgctggctcggcatGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCaa                                                                                                                >  4:329847‑M2/22‑60 (MQ=255)

                                                                                                                           ccatgccgctggctcggcatGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGcc                                                                                                        <  3:259264‑M2/47‑1 (MQ=255)

                                                                                                                           ccatgccgctggctcggcatGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGcc                                                                                                        >  4:259264‑M2/21‑67 (MQ=255)

                                                                                                                           atatGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACa                                             <  2:534770/126‑1 (MQ=255)

                                                                                                                            catgccgctggctcggcatGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTat                                                                      <  2:755052‑M2/81‑1 (MQ=255)

                                                                                                                              TGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAAt                   >  4:813298‑M1/1‑149 (MQ=255)

                                                                                                                               GCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTa                                                                       <  4:1023197‑M1/96‑1 (MQ=255)

                                                                                                                               GCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTa                                                                       >  3:1023197‑M1/1‑96 (MQ=255)

                                                                                                                                  GAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAATGccc               <  1:441487‑M1/149‑1 (MQ=255)

                                                                                                                                       aGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtc                                                           <  4:440337/100‑1 (MQ=255)

                                                                                                                                       aGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtc                                                           >  3:440337/1‑100 (MQ=255)

                                                                                                                                         cggcatGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAATGCCCCTACaaa        <  2:441487‑M2/143‑1 (MQ=255)

                                                                                                                                             atGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAATGCCCCTACAAAATGa    <  2:1185429‑M2/147‑1 (MQ=255)

                                                                                                                                               ggAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAATGCCCCTACAAAATGAAc  <  3:1189836/149‑1 (MQ=255)

                                                                                                                                               ggAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAATGCCCCTACAAAATGAAc  <  1:1411779/149‑1 (MQ=255)

TTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTACTGTAAATGCCCCTACAAAATGAAC  >  NC_000913/2775087‑2775378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.