BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2775212 =	97 (0.700)	6 (0.050)	6/214	NT	6.0%	intergenic (+191/‑333)	yfjW/ypjI	CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related
*	?	NC_000913	2775230 =	97 (0.740)	6 (0.050)	6/214	NT	6.0%	intergenic (+209/‑315)	yfjW/ypjI	CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related

Only 100 of 128 total aligned reads displayed.

AAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTAC  >  NC_000913/2775064‑2775354

aaaTATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATA                                                                                                                                                <  4:337255‑M1/149‑1 (MQ=255)

aaaTATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATA                                                                                                                                                >  1:194874‑M1/1‑149 (MQ=255)

aaaTATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATA                                                                                                                                                >  3:337255‑M1/1‑149 (MQ=255)

aaaTATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATA                                                                                                                                                <  2:194874‑M1/149‑1 (MQ=255)

 tcattttgtaggggcatttacagtagctattcacaactaaatgttagatacaagagaagggatgggatagacagaacctttcagtacgaaagccggttacggcaccatttgcctacagtactccattcaacagctgctggcgcttccAt                                                                                                                                               <  2:1185429‑M1/2‑1 (MQ=255)

     tttgtaggggcatttacagtagctattcacaactaaatgttagatacaagagaagggatgggatagacagaacctttcagtacgaaagccggttacggcaccatttgcctacagtactccattcaacagctgctggcgcttccATGCCg                                                                                                                                           <  2:441487‑M1/6‑1 (MQ=255)

              aaGCCTGCTTTAAAAACAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGcgg                                                                                                                                  <  3:735979‑M2/149‑4 (MQ=255)

                     tttttAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCC                                                                                                                                            <  3:509314‑M1/132‑1 (MQ=255)

                       tttAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGctggctcggcatatttct                                                                                                                         <  4:719362‑M1/149‑19 (MQ=255)

                       ttaaaaaCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAgc                                                                                                                         <  4:735979/146‑1 (MQ=255)

                            aGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGC                                                                                                                                             <  2:192633‑M1/124‑1 (MQ=255)

                            aGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGC                                                                                                                                             >  1:192633‑M1/1‑124 (MQ=255)

                                         gTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATg                                                                                                       >  2:1328636/1‑149 (MQ=255)

                                           gAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGcc                                                                                                                      <  2:130143/132‑1 (MQ=255)

                                              gCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                        >  3:1136879/1‑143 (MQ=255)

                                              gCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                        >  1:1269454/1‑143 (MQ=255)

                                              gCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                        <  4:1136879/143‑1 (MQ=255)

                                                ggACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACt                                                                                                <  1:1328636/149‑1 (MQ=255)

                                                      tCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACt                                                                                                <  2:1334677/143‑1 (MQ=255)

                                                        aTACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAGGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGtg                                                                                                            <  2:1238455/129‑2 (MQ=255)

                                                          aCCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAAt                                                                                      >  2:1458120/1‑149 (MQ=255)

                                                          aCCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAAt                                                                                      <  2:971769/149‑1 (MQ=255)

                                                                   atagacagaacctttcagtacgaaagccggttacggcaccatttgcctacagtactccattcaacagctgctggcgcttccATGCCGAGCCAGCGGCATg                                                                                                                              >  1:755052‑M1/82‑100 (MQ=255)

                                                                   atagacagaacctttcagtacgaaagccggttacggcaccatttgcctacagtactccattcaacagctgctggcgcttccATGCCGAGCCAGCGGCATg                                                                                                                              <  2:755052‑M1/19‑1 (MQ=255)

                                                                       tGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                        <  1:1026494/118‑1 (MQ=255)

                                                                       tGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCC                                                                                                                                            >  2:230959‑M1/1‑82 (MQ=255)

                                                                       tGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCC                                                                                                                                            <  1:230959‑M1/82‑1 (MQ=255)

                                                                           gTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTg                                                                                               <  2:495164/123‑1 (MQ=255)

                                                                           gTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTg                                                                                               >  1:495164/1‑123 (MQ=255)

                                                                            tttttGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                     >  2:899082/1‑116 (MQ=255)

                                                                            tttttGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                     <  1:899082/116‑1 (MQ=255)

                                                                                  tCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGtt                                                                                                            <  1:172177/103‑1 (MQ=255)

                                                                                  tCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGtt                                                                                                            >  2:172177/1‑103 (MQ=255)

                                                                                    gTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGctggctcggcatatttct                                                                                                                         >  3:664453‑M1/1‑70 (MQ=255)

                                                                                    gTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGctggctcggcatatttct                                                                                                                         <  4:664453‑M1/88‑19 (MQ=255)

                                                                                        cccATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAAt                                                                                      <  2:696983/119‑1 (MQ=255)

                                                                                        cccATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAAt                                                                                      >  1:696983/1‑119 (MQ=255)

                                                                                         ccATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                   >  3:1086495/1‑137 (MQ=255)

                                                                                         ccATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                   <  4:1086495/137‑1 (MQ=255)

                                                                                         ccATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGt                                                       >  1:415375/1‑149 (MQ=255)

                                                                                           aTACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGtt                                                      >  3:386961/1‑148 (MQ=255)

                                                                                           aTACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGtt                                                      <  4:386961/148‑1 (MQ=255)

                                                                                           aTACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTc                                                     <  3:1342075/149‑1 (MQ=255)

                                                                                               cTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGc                                                                                          <  3:719032/108‑1 (MQ=255)

                                                                                                tataTTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCt                                                >  1:1185429/1‑149 (MQ=255)

                                                                                                 atatTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                        <  3:451102/92‑1 (MQ=255)

                                                                                                 atatTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAAt                                                                                                        >  4:451102/1‑92 (MQ=255)

                                                                                                  tatTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGctggctcggcatat                                                                                                                             >  2:1287121‑M1/1‑56 (MQ=255)

                                                                                                  tatTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGctggctcggcatat                                                                                                                             <  1:1287121‑M1/70‑15 (MQ=255)

                                                                                                    ttttCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                     <  1:414460/92‑1 (MQ=255)

                                                                                                     ggcaccatttgcctacagtactccattcaacagctgctggcgcttccATGCCGAGCCAGCGGCATgg                                                                                                                             <  3:259264‑M1/20‑1 (MQ=255)

                                                                                                     ggcaccatttgcctacagtactccattcaacagctgctggcgcttccATGCCGAGCCAGCGGCATgg                                                                                                                             >  4:259264‑M1/48‑67 (MQ=255)

                                                                                                         tgttgtTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTatcccatcc                                       >  1:670506/1‑149 (MQ=255)

                                                                                                          gttgttTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTg                                                   >  2:1268914/1‑136 (MQ=255)

                                                                                                          gttgttTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTg                                                   <  1:1268914/136‑1 (MQ=255)

                                                                                                           ttgttTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                     >  4:5058/1‑85 (MQ=255)

                                                                                                              tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATg                                                                                                       <  4:658474/80‑1 (MQ=255)

                                                                                                              tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATg                                                                                                       >  3:658474/1‑80 (MQ=255)

                                                                                                              tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                     >  1:1025690/1‑82 (MQ=255)

                                                                                                              tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                     <  2:1025690/82‑1 (MQ=255)

                                                                                                              tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTa                                                                                                  <  2:253400/85‑1 (MQ=255)

                                                                                                              tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTc                                                     >  2:645118/1‑130 (MQ=255)

                                                                                                              tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtct                                  >  1:1324744/1‑149 (MQ=255)

                                                                                                              tttAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtct                                  <  2:415375/149‑1 (MQ=255)

                                                                                                                tAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACt                                                              >  4:705860/1‑119 (MQ=255)

                                                                                                                 aaCTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                   <  3:193949/113‑1 (MQ=255)

                                                                                                                 aaCTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                   >  4:193949/1‑113 (MQ=255)

                                                                                                                   cTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGt                             <  1:1458120/149‑1 (MQ=255)

                                                                                                                     gCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTAt                           <  4:1330851/149‑1 (MQ=255)

                                                                                                                        aGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTAc                                                               <  1:132538/110‑1 (MQ=255)

                                                                                                                        aGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTAc                                                               >  2:132538/1‑110 (MQ=255)

                                                                                                                         gAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTaa                       <  3:960468/149‑1 (MQ=255)

                                                                                                                             tGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCt                                                    >  4:59724/1‑116 (MQ=255)

                                                                                                                             tGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCt                                                    <  3:59724/116‑1 (MQ=255)

                                                                                                                               aGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                     <  3:600260/65‑1 (MQ=255)

                                                                                                                               aGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGa                                                                                                     >  4:600260/1‑65 (MQ=255)

                                                                                                                               aGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTa                 <  2:670506/149‑1 (MQ=255)

                                                                                                                                 cGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTat                                              >  2:1162273/1‑118 (MQ=255)

                                                                                                                                 cGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTat                                              <  1:1162273/118‑1 (MQ=255)

                                                                                                                                   gTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                 >  4:1646/1‑129 (MQ=255)

                                                                                                                                   gTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                 <  3:1646/129‑1 (MQ=255)

                                                                                                                                   gTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                 >  2:1410598/1‑129 (MQ=255)

                                                                                                                                   gTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                 <  1:1410598/129‑1 (MQ=255)

                                                                                                                                      gAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                 <  2:1445307/126‑1 (MQ=255)

                                                                                                                                      gAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTtctc                                 >  1:1445307/1‑126 (MQ=255)

                                                                                                                                      gAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTaa                       <  1:966770/136‑1 (MQ=255)

                                                                                                                                      gAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTaa                       >  2:966770/1‑136 (MQ=255)

                                                                                                                                        aaaGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTtgt            <  3:61461/145‑1 (MQ=255)

                                                                                                                                        aaaGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTtgt            >  4:61461/1‑145 (MQ=255)

                                                                                                                                           gCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGc     >  3:813298/1‑149 (MQ=255)

                                                                                                                                            ccAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                   >  2:90497/1‑86 (MQ=255)

                                                                                                                                            ccAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTc                                                                   <  1:90497/86‑1 (MQ=255)

                                                                                                                                             cAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAg      >  3:1259170/1‑146 (MQ=255)

                                                                                                                                             cAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAg      <  4:1259170/146‑1 (MQ=255)

                                                                                                                                              aGAAATATGCCGAGCCAGcggcatatttctggcttttcaaccgctcagttctggcagttaaacaacagaaaatataggtatgggtaacgacaaaaacgccactttaaagcaggtatgagtgtccgcttcacgctcaagcctgctttaaa  <  4:719362‑M2/149‑132 (MQ=255)

                                                                                                                                              aGAAATATGCCGAGCCAGcggcatatttctggcttttcaaccgctcagttctggcagttaaacaacagaaaatataggtatgggtaac                                                               >  3:664453‑M2/1‑18 (MQ=255)

                                                                                                                                              aGAAATATGCCGAGCCAGcggcatatttctggcttttcaaccgctcagttctggcagttaaacaacagaaaatataggtatgggtaac                                                               <  4:664453‑M2/88‑71 (MQ=255)

                                                                                                                                                  atatGCCGAGCCAGcggcatatttctggcttttcaaccgctcagttctggcagttaaacaacagaaaata                                                                             <  1:1287121‑M2/70‑57 (MQ=255)

                                                                                                                                                  atatGCCGAGCCAGcggcatatttctggcttttcaaccgctcagttctggcagttaaacaacagaaaata                                                                             >  2:1287121‑M2/1‑14 (MQ=255)

                                                                                                                                                  atatGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACa                     >  1:534770/1‑126 (MQ=255)

AAATATCCTAAGTTAAGCCTGTTTTTAAAGCAGGCTTGAGCGTGAAGCGGACACTCATACCTGCTTTAAAGTGGCGTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGCCGTAACCGGCTTTCGTACTGAAAGGTTCTGTCTATCCCATCCCTTCTCTTGTATCTAACATTTAGTTGTGAATAGCTAC  >  NC_000913/2775064‑2775354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.