| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4530145 | 180 (1.300) | 4 (0.030) | 4/214 | NT | 2.2% | coding (99/1314 nt) | sgcC | putative PTS system EIIC permease component |
| ? | NC_000913 | = 4530173 | 183 (1.400) | coding (71/1314 nt) | sgcC | putative PTS system EIIC permease component | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCGGAGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4529992‑4530145‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccttaTCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCCCTGC < NC_000913/4530173‑4530027 GCCGGAGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTG > 4:115614/1‑149 CCGGAGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGC < 3:115614/149‑1 AGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTA > 2:770304/1‑149 ACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTATCTTCCGCATCCCCTGG > 2:1238153/1‑149 AGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGG < 1:1238153/149‑1 TCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGG < 1:379699/99‑1 TCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGG > 2:379699/1‑99 GCCTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCC < 2:1119589/149‑1 CCTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCCC > 3:1071294/1‑149 CCTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCT < 1:36721/115‑1 CCTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCT < 1:143436/115‑1 CCTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCT > 2:143436/1‑115 CCTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCT > 2:36721/1‑115 CCTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGCCATGACGATCacca < 1:793448/101‑5 CCTTATCGTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGTTTGGTTTTGTCGGTATGGGACTGGTGATCGCCATGACGATCacca > 2:793448/1‑97 CTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCCCT < 1:1213111/149‑1 CTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATAATTGAGCGTTTCGGCCTAGCCCT < 2:1360337/149‑1 CTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGT < 2:1351384/122‑1 CTTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGT > 1:1351384/1‑122 TTATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCCCTG > 3:220500/1‑149 TATCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATGGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCCCTGC < 1:1275976/149‑1 GCCGGAGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4529992‑4530145‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccttaTCTTCCGCATCCCCTGGCTGCAGGCGATTAAGGCAGGGGTAACGGTTGGGATTGGTTTTGTCGGTATGGGACTGGTGATCGTCATGGCGATCGACAGCCTCAGTCCCCCTATCAAAGTGATGATTGAGCGTTTCGGCCTAGCCCTGC < NC_000913/4530173‑4530027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |