New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4530145180 (1.300)4 (0.030) 4/214 NT 2.2% coding (99/1314 nt) sgcC putative PTS system EIIC permease component
?NC_000913 = 4530173 183 (1.400)coding (71/1314 nt) sgcC putative PTS system EIIC permease component
Rejected: Frequency below/above cutoff threshold.

Only 100 of 218 total aligned reads displayed.

ATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCG  >  NC_000913/4530025‑4530321
                                                                                                                                                    |                                                                                                                                                    
aTGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGa                                                                                                                                                      <  1:735969/149‑1 (MQ=255)
   cAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaa                                                                                                                                                   >  3:220500‑M2/1‑146 (MQ=255)
    aGGGCTAGGCCGAAACGCTCAATTATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaag                                                                                                                                                  <  2:1360337‑M2/149‑5 (MQ=255)
    aGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaag                                                                                                                                                  <  1:1213111‑M2/149‑5 (MQ=255)
         tAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCaa                                                                                                                                             <  2:1275976/149‑1 (MQ=255)
          aGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAAt                                                                                                                                            >  1:1127132/1‑149 (MQ=255)
            gCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCa                                                                                                                                          <  3:1106800/149‑1 (MQ=255)
             ccGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCAc                                                                                                                                         <  1:1360337/149‑1 (MQ=255)
               gAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGa                                                                                                                                       <  2:1213111/149‑1 (MQ=255)
                aaaCGCTCCATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACTAAACCAATCCCGACCGTCACCCCTGCCTTAATCGTCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGAt                                                                                                                                      <  3:1227188/149‑1 (MQ=255)
                     cTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCatga                                                                                                                                 <  1:1119589/149‑1 (MQ=255)
                      tCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCa                                                                                                                                              >  4:736399/1‑135 (MQ=255)
                      tCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCa                                                                                                                                              <  3:736399/135‑1 (MQ=255)
                               aCTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGAc                                                                                                                       >  4:338654/1‑149 (MQ=255)
                                     aTAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAAc                                                                                                                 >  3:12614/1‑149 (MQ=255)
                                       aGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaagg                                                                                                                                                 >  2:143436‑M2/1‑110 (MQ=255)
                                         ggggACTGAGGCTGTCGATCGCCATGACGATCACCAGTCACATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTa                                                                                                             >  3:989190/1‑149 (MQ=255)
                                            gACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTAccg                                                                                                          >  1:1167010/1‑149 (MQ=255)
                                              cTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGAc                                                                                                                       >  1:872432/1‑134 (MQ=255)
                                                gAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCACGATGATAGGGACGAAAACGGTACCGCCga                                                                                                      <  3:876465/149‑1 (MQ=255)
                                                   gCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCgagag                                                                                                   >  2:976483/1‑149 (MQ=255)
                                                     tggtgatcgTCATGGCGATCACCAGTCCCATACCGACAAAACCAAACCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGACGAtaagg                                                                                                                                                 >  2:793448‑M2/5‑96 (MQ=255)
                                                      gTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACa                                                                                                >  1:1098504/1‑149 (MQ=255)
                                                         gATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGa                                                                                             <  3:709099/149‑1 (MQ=255)
                                                          aTCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGAt                                                                                            <  2:1167010/149‑1 (MQ=255)
                                                             gCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATa                                                                                                                            >  2:1273628/1‑114 (MQ=255)
                                                              ccATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAg                                                                                               <  1:341434/142‑1 (MQ=255)
                                                                aTGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAGGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATc                                                                                      <  4:1394984/149‑1 (MQ=255)
                                                                   aCGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCaaa                                                                                   <  4:12614/149‑1 (MQ=255)
                                                                      aTCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGa                                                                                                                                                      >  3:245776/1‑79 (MQ=255)
                                                                      aTCACCAGTCCCATACCCACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGTGACAGGATGTAATCAAACAt                                                                                >  2:1005225/1‑149 (MQ=255)
                                                                       tCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGAt                                                                                                                                      >  3:378616/1‑94 (MQ=255)
                                                                        cACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATaa                                                                              >  4:185442/1‑149 (MQ=255)
                                                                             gTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGAt                                                                                                                                      >  1:420249/1‑88 (MQ=255)
                                                                                ccATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGa                                                                                                                                       <  1:966711/84‑1 (MQ=255)
                                                                                 cATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCga                                                                                                      >  1:127229/1‑116 (MQ=255)
                                                                                 cATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACa                                                                                                >  2:112470/1‑122 (MQ=255)
                                                                                   tACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGa                                                                                             >  1:444958/1‑123 (MQ=255)
                                                                                   tACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGa                                                                                             <  2:444958/123‑1 (MQ=255)
                                                                                       gACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCgaga                                                                                                    <  1:532647/112‑1 (MQ=255)
                                                                                       gACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCgaga                                                                                                    >  2:532647/1‑112 (MQ=255)
                                                                                        aCAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATgatgat                                                                                                                             <  3:470035/86‑1 (MQ=255)
                                                                                        aCAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAAc                                                                                                                 >  1:1037825/1‑98 (MQ=255)
                                                                                        aCAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAAc                                                                                                                 <  2:1037825/98‑1 (MQ=255)
                                                                                        aCAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTAt                                                                 >  4:519908/1‑146 (MQ=255)
                                                                                           aaaCCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGaaaa                                                                                                                  >  1:1459377/1‑94 (MQ=255)
                                                                                           aaaCCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGAt                                                                                            <  1:107371/116‑1 (MQ=255)
                                                                                           aaaCCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGAt                                                                                            >  2:107371/1‑116 (MQ=255)
                                                                                           aaaCCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGa                                                              >  3:14263/1‑146 (MQ=255)
                                                                                            aaCCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGAt                                                                                            <  1:1335298/115‑1 (MQ=255)
                                                                                              ccAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAAc                                                        <  3:338654/149‑1 (MQ=255)
                                                                                               cAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTaa                                                                                        <  1:1291776/116‑1 (MQ=255)
                                                                                               cAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATaa                                                                              <  2:1134639/126‑1 (MQ=255)
                                                                                               cAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAAc                                                        >  2:884398/1‑148 (MQ=255)
                                                                                                    ccAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGAAGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGcc                                                  >  1:184011/1‑149 (MQ=255)
                                                                                                        ccGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGa                                              <  2:321413/149‑1 (MQ=255)
                                                                                                        ccGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGa                                              <  2:219698/149‑1 (MQ=255)
                                                                                                           ttACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGAttt                                           <  4:388472/149‑1 (MQ=255)
                                                                                                               cccTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGa                                                                                             <  4:1305950/95‑1 (MQ=255)
                                                                                                               cccTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAAc                                                                                  <  1:817162/106‑1 (MQ=255)
                                                                                                                ccTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTAc                                                                                                            >  2:1115895/1‑79 (MQ=255)
                                                                                                                ccTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACa                                                       <  2:1338576/132‑1 (MQ=255)
                                                                                                                ccTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTtgttgt                                      >  2:278825/1‑149 (MQ=255)
                                                                                                                ccTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTtgttgt                                      >  1:1387891/1‑149 (MQ=255)
                                                                                                                 cTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATc                                                                                      >  2:85234/1‑100 (MQ=255)
                                                                                                                 cTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTgttgtt                                     <  2:1299853/149‑1 (MQ=255)
                                                                                                                  tGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACagag                                                    >  1:686076/1‑133 (MQ=255)
                                                                                                                  tGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACagag                                                    <  2:686076/133‑1 (MQ=255)
                                                                                                                    ccTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaaggcaggggtaacggttgggattggttttgtcggtatgggactggtgatcgtcatggcgatcga                                                                                    >  2:379699‑M2/1‑33 (MQ=255)
                                                                                                                    ccTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaaggcaggggtaacggttgggattggttttgtcggtatgggactggtgatcgtcatggcgatcga                                                                                    <  1:379699‑M2/99‑67 (MQ=255)
                                                                                                                     cTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTaa                                 <  2:896398/149‑1 (MQ=255)
                                                                                                                     cTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTaa                                 <  1:1005225/149‑1 (MQ=255)
                                                                                                                      ttAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCtttt                                                                   <  1:165753/114‑1 (MQ=255)
                                                                                                                      ttAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCtttt                                                                   >  2:165753/1‑114 (MQ=255)
                                                                                                                      ttAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAAc                                <  4:870037/149‑1 (MQ=255)
                                                                                                                      ttAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAAc                                <  4:226559/149‑1 (MQ=255)
                                                                                                                          tCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGATTTAACAGAGCCTTGATTTGTTGTTTTAACGcgt                            >  4:964941/1‑149 (MQ=255)
                                                                                                                          tCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGt                                                            <  3:1362452/117‑1 (MQ=255)
                                                                                                                           cGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTa                                                                  >  2:584375/1‑110 (MQ=255)
                                                                                                                           cGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTa                                                                  <  1:584375/110‑1 (MQ=255)
                                                                                                                           cGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTCAGTTAACAGAGCCTTGATttgt                                         <  1:888349/135‑1 (MQ=255)
                                                                                                                            gCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACa                                                       >  3:904793/1‑120 (MQ=255)
                                                                                                                            gCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACa                                                       <  4:904793/120‑1 (MQ=255)
                                                                                                                                 cAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGtt                     >  4:645788/1‑149 (MQ=255)
                                                                                                                                   gCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGcc                                                                          <  3:1063438/94‑1 (MQ=255)
                                                                                                                                   gCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGcc                                                                          >  4:1063438/1‑94 (MQ=255)
                                                                                                                                    ccAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGAt                  <  3:645788/149‑1 (MQ=255)
                                                                                                                                        gggATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCgaga                                                                                                    >  3:770419/1‑63 (MQ=255)
                                                                                                                                        gggATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCgaga                                                                                                    <  4:770419/63‑1 (MQ=255)
                                                                                                                                        gggATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAAcgc                              >  1:309091/1‑133 (MQ=255)
                                                                                                                                        gggATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCt              <  3:957981/149‑1 (MQ=255)
                                                                                                                                          gATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCtgt            <  3:185442/149‑1 (MQ=255)
                                                                                                                                               ggAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGtt                     <  3:1155910/135‑1 (MQ=255)
                                                                                                                                               ggAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCCAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCtt                                                <  1:1275871/108‑1 (MQ=255)
                                                                                                                                                gAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGAt                                                                                            >  1:234703/1‑63 (MQ=255)
                                                                                                                                                gAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGAt                                                                                            <  2:234703/63‑1 (MQ=255)
                                                                                                                                                gAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCtt                                                                     <  4:11484/86‑1 (MQ=255)
                                                                                                                                                    aTAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGcctcc                                                                       <  3:690142/80‑1 (MQ=255)
                                                                                                                                                    aTAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGcctcc                                                                       >  4:690142/1‑80 (MQ=255)
                                                                                                                                                    aTAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGggcg  >  4:348905/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
ATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACGCGTCGTCGTTGATCCCTGTGAGCAGGGCG  >  NC_000913/4530025‑4530321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.