New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4530145180 (1.300)4 (0.030) 4/214 NT 2.2% coding (99/1314 nt) sgcC putative PTS system EIIC permease component
?NC_000913 = 4530173 183 (1.400)coding (71/1314 nt) sgcC putative PTS system EIIC permease component
Rejected: Frequency below/above cutoff threshold.

Only 100 of 235 total aligned reads displayed.

AGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACG  >  NC_000913/4529997‑4530292
                                                                                                                                                    |                                                                                                                                                   
 ggCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTaa                                                                                                                                                    <  3:2499/149‑1 (MQ=255)
 ggCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTaa                                                                                                                                                    <  2:45521/149‑1 (MQ=255)
  gCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAAt                                                                                                                                                   >  3:1340507/1‑149 (MQ=255)
              ccAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCTATCCCAACCGTTACCCCTGCCTTAATCGACTGCAGcaa                                                                                                                                       <  4:1340507/149‑3 (MQ=255)
                    tCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGAt                                                                                                                                 >  4:1449100/1‑149 (MQ=255)
                        aGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAggg                                                                                                                                    <  2:276853/142‑1 (MQ=255)
                          aCATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGaa                                                                                                                           <  1:770304/149‑1 (MQ=255)
                            aTGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGa                                                                                                                         <  4:1298286/149‑1 (MQ=255)
                              gCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCCATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGAta                                                                                                                       <  1:1275976‑M2/149‑3 (MQ=255)
                                     tAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCaa                                                                                                                <  2:1275976/149‑1 (MQ=255)
                                      aGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAtcttccgcatcccctggctgcaggcgattaaggcaggg                                                                                                               <  1:1238153‑M1/149‑39 (MQ=255)
                                      aGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAAt                                                                                                               >  1:1127132/1‑149 (MQ=255)
                                        gCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCa                                                                                                             <  3:1106800/149‑1 (MQ=255)
                                         ccGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCAc                                                                                                            <  1:1360337/149‑1 (MQ=255)
                                           gAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGa                                                                                                          >  2:1382791/1‑149 (MQ=255)
                                           gAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGa                                                                                                          <  2:1213111/149‑1 (MQ=255)
                                            aaaCGCTCCATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACTAAACCAATCCCGACCGTCACCCCTGCCTTAATCGTCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGAt                                                                                                         <  3:1227188/149‑1 (MQ=255)
                                            aaaCGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGAt                                                                                                         <  3:1434583/149‑1 (MQ=255)
                                            aaaCGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGAt                                                                                                         <  3:936690/149‑1 (MQ=255)
                                                 cTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCatga                                                                                                    <  1:1119589/149‑1 (MQ=255)
                                                  tCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGcc                                                                                                                                               <  4:683285/105‑1 (MQ=255)
                                                  tCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCa                                                                                                                 >  4:736399/1‑135 (MQ=255)
                                                    aaTCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAggg                                                                                                                                    <  4:1215893/114‑1 (MQ=255)
                                                        atcaCTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCa                                                                                                                                           <  1:1169602/103‑1 (MQ=255)
                                                         tcaCTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAggg                                                                                            >  3:226559/1‑149 (MQ=255)
                                                          caCTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAgg                                                                                                                                     >  4:3092/1‑107 (MQ=255)
                                                             tttGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAggg                                                                                                                                    >  1:616055/1‑105 (MQ=255)
                                                             tttGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGa                                                                                        >  3:702179/1‑149 (MQ=255)
                                                                 aTAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAAc                                                                                    <  1:446725/149‑1 (MQ=255)
                                                                   aGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaagg                                                                                                                    <  1:143436‑M2/115‑6 (MQ=255)
                                                                   aGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaagg                                                                                                                    >  2:36721‑M2/1‑110 (MQ=255)
                                                                   aGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaagg                                                                                                                    >  2:143436‑M2/1‑110 (MQ=255)
                                                                   aGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaagg                                                                                                                    <  1:36721‑M2/115‑6 (MQ=255)
                                                                        gACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTAccg                                                                             >  4:1135864/1‑149 (MQ=255)
                                                                            gAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCACGATGATAGGGACGAAAACGGTACCGCCga                                                                         <  3:876465/149‑1 (MQ=255)
                                                                               gCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAAt                                                                                                               <  1:229974/108‑1 (MQ=255)
                                                                               gCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAAt                                                                                                               >  2:229974/1‑108 (MQ=255)
                                                                                   tCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAg                                                                  <  1:183447/149‑1 (MQ=255)
                                                                                     gATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGa                                                                >  1:722223/1‑149 (MQ=255)
                                                                                      aTCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAg                                                                                              >  3:1032216/1‑118 (MQ=255)
                                                                                      aTCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAg                                                                                              <  4:1032216/118‑1 (MQ=255)
                                                                                      aTCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACg                                                                                   <  1:147981/129‑1 (MQ=255)
                                                                                      aTCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACg                                                                                   >  2:147981/1‑129 (MQ=255)
                                                                                      aTCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGAt                                                               <  2:1167010/149‑1 (MQ=255)
                                                                                         gCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATa                                                                                               <  1:1273628/114‑1 (MQ=255)
                                                                                          ccATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCa                                                                                                       <  3:852447/105‑1 (MQ=255)
                                                                                          ccATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAg                                                                  >  2:341434/1‑142 (MQ=255)
                                                                                           cATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAAt                                                          >  4:202134/1‑149 (MQ=255)
                                                                                                  aTCACCAGTCCCATACCCACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGTGACAGGATGTAATCAAACAt                                                   >  2:1005225/1‑149 (MQ=255)
                                                                                                       cAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGc                                              <  1:861226/149‑1 (MQ=255)
                                                                                                         gTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGAt                                                                                                         >  1:420249/1‑88 (MQ=255)
                                                                                                          tCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGcctc                                           >  4:957981/1‑149 (MQ=255)
                                                                                                            ccATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGa                                                                                                          >  2:966711/1‑84 (MQ=255)
                                                                                                             cATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCga                                                                         <  2:127229/116‑1 (MQ=255)
                                                                                                             cATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACa                                                                   >  2:112470/1‑122 (MQ=255)
                                                                                                              aTACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATg                                               <  4:541312/141‑1 (MQ=255)
                                                                                                               tACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGa                                                                <  2:444958/123‑1 (MQ=255)
                                                                                                               tACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGa                                                                >  1:444958/1‑123 (MQ=255)
                                                                                                                 ccGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTAt                                    <  1:1382791/149‑1 (MQ=255)
                                                                                                                 ccGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTAt                                    <  1:976483/149‑1 (MQ=255)
                                                                                                                 ccGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTAt                                    <  2:1098504/149‑1 (MQ=255)
                                                                                                                   gACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCgaga                                                                       >  2:532647/1‑112 (MQ=255)
                                                                                                                   gACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCgaga                                                                       <  1:532647/112‑1 (MQ=255)
                                                                                                                    aCAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATgatgat                                                                                                <  3:470035/86‑1 (MQ=255)
                                                                                                                    aCAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAAc                                                                                    <  2:1037825/98‑1 (MQ=255)
                                                                                                                    aCAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAAc                                                                                    >  1:1037825/1‑98 (MQ=255)
                                                                                                                       aaaCCATTCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGa                                 <  4:14263/146‑1 (MQ=255)
                                                                                                                       aaaCCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGAt                                                               <  1:107371/116‑1 (MQ=255)
                                                                                                                       aaaCCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGa                                 >  3:14263/1‑146 (MQ=255)
                                                                                                                        aaCCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGAt                                                               >  2:1335298/1‑115 (MQ=255)
                                                                                                                          ccAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAAc                           <  3:338654/149‑1 (MQ=255)
                                                                                                                           cAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATaa                                                 >  1:1134639/1‑126 (MQ=255)
                                                                                                                           cAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATaa                                                 <  2:1134639/126‑1 (MQ=255)
                                                                                                                           cAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAAc                           >  2:884398/1‑148 (MQ=255)
                                                                                                                           cAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAAc                           <  1:884398/148‑1 (MQ=255)
                                                                                                                           cAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACa                          >  4:344867/1‑149 (MQ=255)
                                                                                                                              tCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACagag                       >  3:388472/1‑149 (MQ=255)
                                                                                                                                ccAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGcc                     >  1:321413/1‑149 (MQ=255)
                                                                                                                                      gTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGAtt               >  3:667208/1‑149 (MQ=255)
                                                                                                                                       ttACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGAttt              <  4:388472/149‑1 (MQ=255)
                                                                                                                                          ccccTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATttgtt           <  2:184011/149‑1 (MQ=255)
                                                                                                                                           cccTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAAc                                                     <  1:817162/106‑1 (MQ=255)
                                                                                                                                           cccTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATttg             >  3:1178423/1‑146 (MQ=255)
                                                                                                                                            ccTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAg                                <  2:605371/126‑1 (MQ=255)
                                                                                                                                             cTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATc                                                         >  2:85234/1‑100 (MQ=255)
                                                                                                                                             cTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTgttgtt        >  1:1299853/1‑149 (MQ=255)
                                                                                                                                              tGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACagag                       <  2:686076/133‑1 (MQ=255)
                                                                                                                                               gCCTTAtcttccgcatcccctggctgcaggcgattaaggcaggggtaacggttgggattggttttgtcggtatgggactggtgatcgtcatggcgatcgacagcctcagtccccctatcaaagtgatgattgagcgtttcggcctagcc      <  2:1119589‑M1/149‑144 (MQ=255)
                                                                                                                                                ccTTAtcgtccgcatcccctggctgcaggcgattaaggcaggggtaacggttgggtttggttttgtcggtatgggactggtgatcgccatgacgatcacca                                                     >  2:793448‑M1/1‑5 (MQ=255)
                                                                                                                                                ccTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaaggcaggggtaacggttgggattggttttgtcggtatgggactggtgatcgtcatggcgatcga                                                       >  2:379699‑M2/1‑33 (MQ=255)
                                                                                                                                                ccTTAATCGCCTGCAGCCAGGGGATGCGGAAGAtaaggcaggggtaacggttgggattggttttgtcggtatgggactggtgatcgtcatggcgatcga                                                       <  1:379699‑M2/99‑67 (MQ=255)
                                                                                                                                                 cTTAtcttccgcatcccctggctgcaggcgattaaggcaggggtaacggttgggattggttttgtcggtatgggactggtgatcgtcatggcgatcgacagcctcagtccccctatcaaagtgatgattgagcgtttcggcctagccct    <  1:1213111‑M1/149‑146 (MQ=255)
                                                                                                                                                 cTTAtcttccgcatcccctggctgcaggcgattaaggcaggggtaacggttgggattggttttgtcggtatgggactggtgatcgtcatggcgatcgacagcctcagtccccctatcaaagtgataattgagcgtttcggcctagccct    <  2:1360337‑M1/149‑146 (MQ=255)
                                                                                                                                                 cTTAtcttccgcatcccctggctgcaggcgattaaggcaggggtaacggttgggattggttttgtcggtatgggactggtgatcgtcatggcgatcgacagcctcagtccccctatcaaagt                               >  1:1351384‑M1/1‑4 (MQ=255)
                                                                                                                                                 cTTAtcttccgcatcccctggctgcaggcgattaaggcaggggtaacggttgggattggttttgtcggtatgggactggtgatcgtcatggcgatcgacagcctcagtccccctatcaaagt                               <  2:1351384‑M1/122‑119 (MQ=255)
                                                                                                                                                 cTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTaa    <  1:1005225/149‑1 (MQ=255)
                                                                                                                                                  ttAtcttccgcatcccctggctgcaggcgattaaggcaggggtaacggttgggattggttttgtcggtatgggactggtgatcgtcatggcgatcgacagcctcagtccccctatcaaagtgatgattgagcgtttcggcctagccctg   >  3:220500‑M1/1‑3 (MQ=255)
                                                                                                                                                  ttAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAAc   <  4:226559/149‑1 (MQ=255)
                                                                                                                                                  ttAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAAc   <  4:876625/149‑1 (MQ=255)
                                                                                                                                                   tAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAAcg  >  2:793849/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
AGGCAGGGCCTGCGCCAACGTCAAAGACATGCAGGGCTAGGCCGAAACGCTCAATCATCACTTTGATAGGGGGACTGAGGCTGTCGATCGCCATGACGATCACCAGTCCCATACCGACAAAACCAATCCCAACCGTTACCCCTGCCTTAATCGCCTGCAGCCAGGGGATGCGGAAGATAAGGCCAATCACGATCATGATGATAGGGACGAAAACGGTACCGCCGAGAGACAGGATGTAATCAAACATAATGCCTCCTTTTATTGAGTTAACAGAGCCTTGATTTGTTGTTTTAACG  >  NC_000913/4529997‑4530292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.