mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,521 | 0 | T | C | 22.1% | 146.3 / 20.4 | 88 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 128 (0.980) | 30 (0.250) | 28/486 | 3.7 | 23.4% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 76 (0.620) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 114 (0.880) | 24 (0.200) | 16/486 | 6.2 | 20.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 75 (0.610) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3736656 = | 576 (4.430) | 6 (0.050) | 5/498 | 10.8 | 1.1% | coding (522/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | = 3736652 | 557 (4.450) | coding (526/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | = 1687166 | 168 (1.290) | 5 (0.040) | 5/516 | 11.1 | 2.9% | coding (1212/1647 nt) | fumA | fumarate hydratase (fumarase A), aerobic Class I |
| ? | NC_000913 | 1687170 = | 165 (1.270) | coding (1208/1647 nt) | fumA | fumarate hydratase (fumarase A), aerobic Class I | |||||
| * | ? | NC_000913 | 1469809 = | NA (NA) | 4 (0.030) +TTT |
4/512 | 11.6 | 25.2% | noncoding (514/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 4508164 = | 12 (0.090) | noncoding (516/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | 271054 = | 9 (0.070) | 4 (0.030) +TTT |
4/512 | 11.6 | 31.0% | noncoding (514/1221 nt) | IS30 | repeat region |
| ? | NC_000913 | 4508164 = | NA (NA) | noncoding (516/1221 nt) | IS30 | repeat region | |||||
| * | ? | NC_000913 | = 3764116 | 329 (2.600) | 17 (0.130) +CCTGA |
3/494 | 12.1 | 4.9% | coding (1934/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | 3764117 = | NA (NA) | coding (1935/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 114505 | 134 (1.030) | 3 (0.020) | 3/494 | 12.1 | 2.4% | intergenic (+18/+17) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein |
| ? | NC_000913 | = 114511 | 119 (0.960) | intergenic (+24/+11) | guaC/hofC | GMP reductase/assembly protein in type IV pilin biogenesis, transmembrane protein | |||||
| * | ? | NC_000913 | = 3806362 | 423 (3.300) | 9 (0.070) +ACC |
3/504 | 12.2 | 2.1% | coding (706/1125 nt) | waaG | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I |
| ? | NC_000913 | 3806363 = | 429 (3.300) | coding (705/1125 nt) | waaG | UDP‑glucose:(heptosyl)lipopolysaccharide alpha‑1,3‑glucosyltransferase; lipopolysaccharide core biosynthesis protein; lipopolysaccharide glucosyltransferase I | |||||
| * | ? | NC_000913 | = 2347574 | 102 (0.800) | 5 (0.040) +GGCG |
3/502 | 12.2 | 4.6% | coding (191/1131 nt) | nrdB | ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein |
| ? | NC_000913 | 2347575 = | 105 (0.810) | coding (192/1131 nt) | nrdB | ribonucleoside‑diphosphate reductase 1, beta subunit, ferritin‑like protein | |||||