mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,875,521 | 0 | T | C | 20.6% | 129.3 / 13.2 | 69 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 20 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 381689 | NA (NA) | 8 (0.060) | 6/496 | 11.0 | NA | noncoding (430/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381743 | NA (NA) | noncoding (484/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3762282 | 289 (2.200) | 5 (0.040) | 5/492 | 11.5 | 2.7% | coding (100/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3762441 | 81 (0.650) | coding (259/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3619461 | 29 (0.220) | 5 (0.040) | 5/492 | 11.5 | 3.0% | coding (270/4236 nt) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| ? | NC_000913 | = 3762271 | 291 (2.320) | coding (89/4134 nt) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor | |||||
| * | ? | NC_000913 | = 3771659 | 330 (2.570) | 21 (0.160) +GGAT |
4/496 | 12.2 | 6.0% | coding (86/363 nt) | yibI | DUF3302 family inner membrane protein |
| ? | NC_000913 | 3771660 = | 333 (2.540) | coding (85/363 nt) | yibI | DUF3302 family inner membrane protein | |||||
| * | ? | NC_000913 | = 4398559 | 108 (0.850) | 6 (0.050) +CAGTCGT |
3/484 | 12.8 | 5.2% | coding (1148/1848 nt) | mutL | methyl‑directed mismatch repair protein |
| ? | NC_000913 | 4398560 = | 112 (0.850) | coding (1149/1848 nt) | mutL | methyl‑directed mismatch repair protein | |||||
| * | ? | NC_000913 | = 4039212 | NA (NA) | 30 (0.230) +GGAGAA |
3/486 | 12.8 | 48.2% | noncoding (1694/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| ? | NC_000913 | 4039213 = | 33 (0.250) | noncoding (1695/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | = 3945398 | NA (NA) | 30 (0.230) +GGAGAA |
3/486 | 12.8 | 39.5% | noncoding (1695/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 3945399 = | 47 (0.360) | noncoding (1696/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913 | = 227453 | NA (NA) | 30 (0.230) +GGAGAA |
3/486 | 12.8 | 91.1% | noncoding (1695/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 227454 = | 3 (0.020) | noncoding (1696/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 3736656 = | 565 (4.310) | 3 (0.020) | 3/494 | 12.9 | 0.54% | coding (522/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | = 3736652 | 553 (4.390) | coding (526/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | = 1082873 | 143 (1.090) | 3 (0.020) | 3/494 | 12.9 | 2.1% | coding (631/1128 nt) | efeO | inactive ferrous ion transporter EfeUOB |
| ? | NC_000913 | = 1083021 | 149 (1.180) | coding (779/1128 nt) | efeO | inactive ferrous ion transporter EfeUOB | |||||