mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 22.9% | 119.4 / 23.4 | 63 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4498180 = | NA (NA) | 9 (0.070) | 6/500 | 10.7 | NA | intergenic (+240/‑92) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| ? | NC_000913 | = 4499511 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1467909 = | NA (NA) | 8 (0.060) | 6/500 | 10.7 | NA | intergenic (+5/+12) | ydbA/insD1 | pseudogene, autotransporter homolog; interrupted by IS2 and IS30/IS2 transposase TnpB |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 7 (0.060) | 4/422 | 10.8 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 1960122 = | 113 (0.860) | 5 (0.040) | 5/486 | 11.1 | 4.2% | coding (61/1734 nt) | argS | arginyl‑tRNA synthetase |
| ? | NC_000913 | 1960144 = | 120 (0.940) | coding (83/1734 nt) | argS | arginyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 1616905 | 91 (0.690) | 4 (0.030) | 4/480 | 11.6 | 4.4% | intergenic (+27/‑123) | yneK/ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible |
| ? | NC_000913 | = 1616917 | 86 (0.680) | intergenic (+39/‑111) | yneK/ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible | |||||
| * | ? | NC_000913 | = 67363 | 91 (0.690) | 4 (0.030) | 4/478 | 11.6 | 4.4% | coding (975/1503 nt) | araA | L‑arabinose isomerase |
| ? | NC_000913 | = 67394 | 86 (0.680) | coding (944/1503 nt) | araA | L‑arabinose isomerase | |||||
| * | ? | NC_000913 | = 2002312 | 125 (0.990) | 8 (0.060) +GCACC |
3/468 | 12.2 | 5.9% | coding (1295/1497 nt) | fliC | flagellar filament structural protein (flagellin) |
| ? | NC_000913 | 2002313 = | 129 (0.980) | coding (1294/1497 nt) | fliC | flagellar filament structural protein (flagellin) | |||||
| * | ? | NC_000913 | 4614257 = | NA (NA) | 4 (0.030) | 3/480 | 12.3 | NA | noncoding (1/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913 | = 4614660 | NA (NA) | intergenic (+400/+20) | yjjV/yjjW | putative DNase/putative pyruvate formate lyase activating enzyme | |||||
| * | ? | NC_000913 | = 3256408 | 101 (0.800) | 6 (0.050) +CGC |
3/476 | 12.3 | 5.5% | coding (244/1311 nt) | yhaM | putative L‑serine dehydratase alpha chain |
| ? | NC_000913 | 3256409 = | 102 (0.770) | coding (243/1311 nt) | yhaM | putative L‑serine dehydratase alpha chain | |||||
| * | ? | NC_000913 | = 3209213 | 121 (0.920) | 3 (0.020) | 3/480 | 12.3 | 2.5% | coding (1190/1464 nt) | ttdT | L‑tartrate/succinate antiporte |
| ? | NC_000913 | = 3209256 | 117 (0.930) | coding (1233/1464 nt) | ttdT | L‑tartrate/succinate antiporte | |||||