mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4363384 = | 135 (1.290) | 4 (0.040) | 4/244 | NT | 3.2% | coding (1659/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC |
| ? | NC_000913 | 4363422 = | 113 (1.150) | coding (1621/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC | |||||
| * | ? | NC_000913 | 4332676 = | 104 (0.990) | 4 (0.040) | 4/248 | NT | 3.9% | coding (597/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| ? | NC_000913 | 4332734 = | 96 (0.960) | coding (539/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR | |||||
| * | ? | NC_000913 | = 4303996 | 96 (0.910) | 4 (0.040) | 4/258 | NT | 3.7% | coding (114/1032 nt) | mdtN | membrane fusion protein of efflux pump |
| ? | NC_000913 | = 4628792 | 114 (1.090) | noncoding (98/150 nt) | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 4070456 | 105 (1.000) | 4 (0.040) | 4/246 | NT | 4.2% | intergenic (‑55/+59) | yihR/yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase |
| ? | NC_000913 | = 4070481 | 85 (0.860) | intergenic (‑80/+34) | yihR/yihS | putative sulphoquinovose mutarotase/sulphoquinovose isomerase | |||||
| * | ? | NC_000913 | = 3788249 | 401 (3.820) | 4 (0.040) | 4/260 | NT | 1.5% | coding (149/960 nt) | yibQ | putative polysaccharide deacetylase |
| ? | NC_000913 | = 4229700 | 120 (1.140) | coding (443/690 nt) | pepE | peptidase E, alpha‑aspartyl dipeptidase | |||||
| * | ? | NC_000913 | 3755505 = | 407 (3.880) | 3 (0.030) | 3/246 | NT | 0.80% | coding (1007/1539 nt) | aldB | aldehyde dehydrogenase B |
| ? | NC_000913 | 3755556 = | 361 (3.640) | coding (956/1539 nt) | aldB | aldehyde dehydrogenase B | |||||
| * | ? | NC_000913 | 3749433 = | 317 (3.020) | 8 (0.080) | 7/252 | NT | 2.6% | coding (202/861 nt) | sgbU | putative L‑xylulose 5‑phosphate 3‑epimerase |
| ? | NC_000913 | 3749475 = | 294 (2.890) | coding (244/861 nt) | sgbU | putative L‑xylulose 5‑phosphate 3‑epimerase | |||||
| * | ? | NC_000913 | 3721998 = | 484 (4.610) | 4 (0.040) | 4/244 | NT | 0.90% | noncoding (1366/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | 3722033 = | 425 (4.320) | noncoding (1401/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | 3694553 = | 85 (0.810) | 4 (0.040) +C |
4/258 | NT | 4.5% | coding (684/2619 nt) | bcsA | cellulose synthase, catalytic subunit |
| ? | NC_000913 | 3844657 = | 86 (0.820) | coding (694/1767 nt) | adeD | cryptic adenine deaminase | |||||
| * | ? | NC_000913 | 3521815 = | 85 (0.810) | 3 (0.030) | 3/242 | NT | 3.7% | coding (158/540 nt) | hofN | DNA catabolic putative fimbrial assembly protein |
| ? | NC_000913 | 3521857 = | 79 (0.810) | coding (116/540 nt) | hofN | DNA catabolic putative fimbrial assembly protein | |||||