mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| JC JC | 564,107 | IS2 (+) +5 bp | coding (370‑374/633 nt) | sfmZ ← | response regulator family protein |
| MC JC | 1,299,499 | Δ1,199 bp | intergenic (+254/‑485) | ychE → / → oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 4,116,933 | G→T | P97H (CCT→CAT) | glpK ← | glycerol kinase |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 315229 = | NA (NA) | 182 (1.110) +TC |
98/512 | 0.2 | 37.6% | noncoding (1/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 3770494 | 304 (1.840) | coding (886/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump | |||||
| * | ? | NC_000913 | 1207790 = | 23 (0.140) | 124 (0.800) | 76/484 | 0.6 | 84.8% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 23 (0.150) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 24 (0.150) | 139 (0.900) | 89/484 | 0.3 | 85.9% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 23 (0.150) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 1467910 = | NA (NA) | 104 (0.630) | 66/516 | 1.3 | 92.0% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1651029 | 9 (0.050) | noncoding (187/706 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1468433 | NA (NA) | 66 (0.400) | 51/516 | 2.6 | NA | noncoding (808/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 2171428 | NA (NA) | 219 (1.330) | 125/514 | 0.0 | 42.5% | noncoding (1258/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | 3770491 = | 296 (1.800) | coding (889/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump | |||||
| * | ? | NC_000913 | 3711574 = | 138 (0.830) | 369 (2.240) | 156/514 | 0.0 | 68.4% | coding (434/1209 nt) | yhjX | pyruvate‑inducible inner membrane protein, putative transporter |
| ? | NC_000913 | = 3828611 | 203 (1.230) | coding (55/1206 nt) | gltS | glutamate transporter | |||||