| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4096011 = | 142 (1.210) | 4 (0.040) | 4/250 | NT | 2.9% | coding (1438/1470 nt) | rhaB | rhamnulokinase |
| ? | NC_000913 | 4096045 = | 129 (1.160) | coding (1404/1470 nt) | rhaB | rhamnulokinase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGATTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4096164‑4096011‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcactGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCCG > NC_000913/4096045‑4096191 TCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGAT > 4:963123/1‑149TCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGAT < 2:318888/149‑1 ACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGATTCA < 1:497477/149‑1 ACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGATTCA < 3:659493/149‑1 CGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGATTCAC < 4:628086/149‑1 ATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGATTCA < 1:516993/139‑1 ATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGATTCA > 2:516993/1‑139 GGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGATTCAC > 3:537352/1‑97 GGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGATTCAC > 3:808813/1‑97 GGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGATTCAC < 4:537352/97‑1 GGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGATTCAC < 4:808813/97‑1 GATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGG < 3:424979/109‑1 GATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGG > 4:424979/1‑109 TGAAATTGC‑CCACTATGTGGCGCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAA < 2:709160/90‑1 TGAAATTGC‑CCACTATGTGGCGCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAA > 1:709160/1‑90 CACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACC < 2:615660/149‑1 CTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCCG > 4:960527/1‑149 TCGACGCTCGGCAATATCGGCATCCAGTTAATGACGCTGGATGAACTCAACAATGTGGATGATTTCCGTCAGGTCGTCAGCACCACCGCGAATCTGACCACCTTTACCCCTAATCCTGACAGTGAAATTGC‑CCACTATGTGGCGCAGATTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4096164‑4096011‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcactGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCCG > NC_000913/4096045‑4096191 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |