New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4096011 =142 (1.210)4 (0.040) 4/250 NT 2.9% coding (1438/1470 nt) rhaB rhamnulokinase
?NC_000913 4096045 = 129 (1.160)coding (1404/1470 nt) rhaB rhamnulokinase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 153 total aligned reads displayed.

GCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCCGAA  >  NC_000913/4095901‑4096193
                                                                                                                                                 |                                                                                                                                                    
     gcCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTa                                                                                                                                             <  4:1046337/149‑1 (MQ=255)
     gcCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTa                                                                                                                                             <  3:213886/149‑1 (MQ=255)
      cctcccCGACATCAATCCCCACCGCCGCGAAACGCAGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCGCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAg                                                                                                                                            <  2:54077/149‑1 (MQ=255)
       ctcctcGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAgg                                                                                                                                           <  4:893968/149‑1 (MQ=255)
        tcctcGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGCTTAggg                                                                                                                                          >  4:613854/1‑149 (MQ=255)
        tcctcGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAggg                                                                                                                                          >  4:110059/1‑149 (MQ=255)
        tcctcGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAggg                                                                                                                                          >  2:1023370/1‑149 (MQ=255)
         cctcGACATCAATCCCCACCGCCGCGAAACACTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAgggg                                                                                                                                         <  4:552723/149‑1 (MQ=255)
          ctcGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGt                                                                                                                                        <  1:515607/149‑1 (MQ=255)
           tcGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTa                                                                                                                                       >  3:471555/1‑149 (MQ=255)
              aCATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAg                                                                                                                                    <  2:919472/149‑1 (MQ=255)
               cATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAgg                                                                                                                                   <  3:630059/149‑1 (MQ=255)
                aTCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAggt                                                                                                                                  <  2:747196/149‑1 (MQ=255)
                aTCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAggt                                                                                                                                  >  4:360105/1‑149 (MQ=255)
                 tCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAggtg                                                                                                                                 <  1:1023370/149‑1 (MQ=255)
                  cAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAggtgg                                                                                                                                <  4:346034/149‑1 (MQ=255)
                   aaTCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAggtggt                                                                                                                               >  1:315982/1‑149 (MQ=255)
                    aTCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTc                                                                                                                              <  4:410386/149‑1 (MQ=255)
                    aTCCCCACCGCCGCGAAACGCTGTTTCGCTAACTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTc                                                                                                                              >  2:271870/1‑149 (MQ=255)
                     tCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAg                                                                                                                                            <  2:980371/134‑1 (MQ=255)
                     tCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAg                                                                                                                                            >  1:980371/1‑134 (MQ=255)
                     tCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCa                                                                                                                             >  1:458416/1‑149 (MQ=255)
                      ccccACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAg                                                                                                                            >  3:241595/1‑149 (MQ=255)
                            cgccgcGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTcgc                                                                                                                      <  4:63006/149‑1 (MQ=255)
                              ccgcGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAg                                                                                                                                                  <  4:1023784/119‑1 (MQ=255)
                               agcgAAACAGCGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCggt                                                                                                                   >  3:302155/2‑149 (MQ=255)
                                   aaaCGCTGTTTCGCTAGCTCCAAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGgtggtg                                                                                                               >  3:501424/1‑149 (MQ=255)
                                     aCGCTGTTTCGCTAGCTCCAAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCt                                                                                                             <  4:501424/149‑1 (MQ=255)
                                       gCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTga                                                                                                           <  4:471555/149‑1 (MQ=255)
                                       gCTGTTTCGCTAGCTCCCAGGCATGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTga                                                                                                           >  4:729867/1‑149 (MQ=255)
                                         tGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTgacg                                                                                                         >  1:66030/1‑149 (MQ=255)
                                           tttCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTgacgac                                                                                                       <  1:743601/149‑1 (MQ=255)
                                             tCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCt                                                                                                     <  1:150064/149‑1 (MQ=255)
                                             tCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAACCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCt                                                                                                     <  3:99241/149‑1 (MQ=255)
                                              cGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTg                                                                                                    <  2:435908/149‑1 (MQ=255)
                                               gCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGa                                                                                                   >  1:196556/1‑149 (MQ=255)
                                                gatgatttccgtcaggtcgtcagcaccaccgcgaatctgaccacctttacccctaatcctgacagtgaatctgcgccacatagtgggcaatttcactGTCAGGATTAgg                                                                                                                                           >  4:424979‑M2/98‑109 (MQ=255)
                                                gatgatttccgtcaggtcgtcagcaccaccgcgaatctgaccacctttacccctaatcctgacagtgaatctgcgccacatagtgggcaatttcactGTCAGGATTAgg                                                                                                                                           <  3:424979‑M2/12‑1 (MQ=255)
                                                cTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGAc                                                                                                  >  2:398426/1‑149 (MQ=255)
                                                  aGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACgg                                                                                                <  2:497796/149‑1 (MQ=255)
                                                      cccAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAat                                                                                            >  3:299110/1‑149 (MQ=255)
                                                         aGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAatcat                                                                                         >  3:689401/1‑149 (MQ=255)
                                                          ggCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGGTTCGCGGTGGTGCTGACGACCTGACGGAAatcatc                                                                                        <  1:246086/149‑1 (MQ=255)
                                                          ggCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAatcatc                                                                                        <  4:1015708/149‑1 (MQ=255)
                                                               gTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACAt                                                                                   <  1:897806/149‑1 (MQ=255)
                                                                ttCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACAtt                                                                                  <  2:315982/149‑1 (MQ=255)
                                                                ttCCAGTTGAGTGGTCATGCGCAAAGCTCC‑TTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACAttg                                                                                 <  4:820354/149‑1 (MQ=255)
                                                                   cAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACAttgtt                                                                               <  2:689117/149‑1 (MQ=255)
                                                                   cAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACAttgtt                                                                               <  1:834753/149‑1 (MQ=255)
                                                                   cAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACAttgtt                                                                               <  4:241595/149‑1 (MQ=255)
                                                                   cAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACAttgtt                                                                               <  2:614729/149‑1 (MQ=255)
                                                                     gTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGa                                                                             <  2:883616/149‑1 (MQ=255)
                                                                     gTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGa                                                                             <  4:302155/149‑1 (MQ=255)
                                                                     gTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGa                                                                             <  2:351203/149‑1 (MQ=255)
                                                                     gTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGa                                                                             <  2:260149/149‑1 (MQ=255)
                                                                      ttGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAg                                                                            <  3:179099/149‑1 (MQ=255)
                                                                            ggTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATc                                                                      <  1:590320/149‑1 (MQ=255)
                                                                              tCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAg                                                                                                                                            >  4:861028/1‑77 (MQ=255)
                                                                              tCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAg                                                                                                                                            <  3:861028/77‑1 (MQ=255)
                                                                              tCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCa                                                                    >  2:255456/1‑149 (MQ=255)
                                                                                aTGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGc                                                                  >  2:280179/1‑149 (MQ=255)
                                                                                   tgcAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTc                                                               <  4:787142/148‑1 (MQ=255)
                                                                                     cAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCAt                                                             <  4:368609/149‑1 (MQ=255)
                                                                                         gCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAAc                                                         <  1:271870/149‑1 (MQ=255)
                                                                                          cTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACt                                                        <  3:707848/149‑1 (MQ=255)
                                                                                           tCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTg                                                       >  1:1053303/1‑149 (MQ=255)
                                                                                             cTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCggt                                                                                                                   >  4:980472/1‑87 (MQ=255)
                                                                                             cTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCggt                                                                                                                   <  3:980472/87‑1 (MQ=255)
                                                                                             cTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCgg                                                                                                                    <  1:313197/86‑1 (MQ=255)
                                                                                             cTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCgg                                                                                                                    >  2:313197/1‑86 (MQ=255)
                                                                                             cTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGa                                                     <  1:902308/149‑1 (MQ=255)
                                                                                             cTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGa                                                     >  2:392559/1‑149 (MQ=255)
                                                                                              tttGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGAt                                                    >  1:1047699/1‑149 (MQ=255)
                                                                                              tttGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGAt                                                    >  4:915678/1‑149 (MQ=255)
                                                                                              tttGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGAt                                                    <  2:1047699/149‑1 (MQ=255)
                                                                                                  tctgtcGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGc                                                  >  1:957616/1‑147 (MQ=255)
                                                                                                  tctgtcGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGc                                                  <  2:957616/147‑1 (MQ=255)
                                                                                                  cctaatcctgacAGTGAAATTGC‑CCACTATGTGGCGCAGATTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAatcatc                                                                                        <  3:424979‑M1/97‑1 (MQ=255)
                                                                                                         tgtAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGc                                         <  3:679003/149‑1 (MQ=255)
                                                                                                         tgtAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGc                                         >  3:558879/1‑149 (MQ=255)
                                                                                                          gtAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGcc                                        >  1:610369/1‑149 (MQ=255)
                                                                                                               GTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATcc                                                                                       <  4:808813‑M1/97‑1 (MQ=255)
                                                                                                               GTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATcc                                                                                       >  3:808813‑M1/1‑97 (MQ=255)
                                                                                                               GTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATcc                                                                                       >  3:537352‑M1/1‑97 (MQ=255)
                                                                                                                TGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGatat                                            >  2:516993‑M1/1‑139 (MQ=255)
                                                                                                                TGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGatat                                            <  1:516993‑M1/139‑1 (MQ=255)
                                                                                                                TGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGt                                  <  3:659493‑M1/149‑1 (MQ=255)
                                                                                                                 tgaaattgcccactatgtggcgcagattcactGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGaaa                                                                                             >  1:709160‑M2/33‑90 (MQ=255)
                                                                                                                 tgaaattgcccactatgtggcgcagattcactGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGaaa                                                                                             <  2:709160‑M2/58‑1 (MQ=255)
                                                                                                                   ATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGa                               >  4:963123‑M1/1‑149 (MQ=255)
                                                                                                                    tCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAg                              >  1:798660/1‑149 (MQ=255)
                                                                                                                    tCTGCGCCACATAGTGG‑GCAATTTCACTGTC‑GGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAgg                             >  4:732028/1‑149 (MQ=255)
                                                                                                                     cTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAgg                             <  4:220583/149‑1 (MQ=255)
                                                                                                                      tGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGc                            <  2:765055/149‑1 (MQ=255)
                                                                                                                         gcCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTc                         >  1:424614/1‑149 (MQ=255)
                                                                                                                          ccACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCa                        >  4:670347/1‑149 (MQ=255)
                                                                                                                             caTAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACa                     <  2:458416/149‑1 (MQ=255)
                                                                                                                                        aaTTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGa           <  1:307835/149‑1 (MQ=255)
                                                                                                                                               ctGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCCg    >  4:960527‑M2/3‑149 (MQ=255)
                                                                                                                                                 gTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCCGaa  >  4:310863/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
GCAGCGCCTCCTCGACATCAATCCCCACCGCCGCGAAACGCTGTTTCGCTAGCTCCCAGGCCTGTTCCAGTTGAGTGGTCATGCGCAAAGCTCCTTTGTCTGTCGTGTAGAGTGAATCTGCGCCACATAGTGG‑GCAATTTCACTGTCAGGATTAGGGGTAAAGGTGGTCAGATTCGCGGTGGTGCTGACGACCTGACGGAAATCATCCACATTGTTGAGTTCATCCAGCGTCATTAACTGGATGCCGATATTGCCGAGCGTCGAGGCTTCAACAGGCCCGGCGATCACCCGAA  >  NC_000913/4095901‑4096193

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.