mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 41 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 74 (0.370) | 51/506 | 3.6 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1096961 = | 119 (0.570) | 16 (0.110) | 3/362 | 14.9 | 17.4% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1097503 | 70 (0.490) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 2765420 = | 149 (0.720) | 5 (0.030) | 5/434 | 15.1 | 3.8% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 126 (0.730) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 3776001 = | 624 (3.000) | 6 (0.030) | 6/504 | 15.8 | 0.99% | coding (430/588 nt) | mtlR | mannitol operon repressor |
| ? | NC_000913 | 3776026 = | 602 (3.000) | coding (455/588 nt) | mtlR | mannitol operon repressor | |||||
| * | ? | NC_000913 | = 1987441 | 168 (0.810) | 7 (0.030) | 6/502 | 15.8 | 4.1% | intergenic (+13/+66) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein |
| ? | NC_000913 | = 1987450 | 164 (0.820) | intergenic (+22/+57) | ftnB/yecJ | ferritin B, putative ferrous iron reservoir/DUF2766 family protein | |||||
| * | ? | NC_000913 | = 2765411 | 107 (0.640) | 28 (0.140) +GCACTATG |
3/402 | 15.9 | 18.0% | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | 2765412 = | 130 (0.620) | intergenic (‑259/+101) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 6 (0.030) | 3/444 | 16.9 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 3787895 = | 506 (2.430) | 4 (0.020) | 4/502 | 17.2 | 0.82% | coding (1058/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor |
| ? | NC_000913 | = 3787891 | 486 (2.430) | coding (1054/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor | |||||
| * | ? | NC_000913 | 2054966 = | 178 (0.860) | 4 (0.020) | 4/502 | 17.2 | 2.3% | intergenic (+7/‑95) | shiA/amn | shikimate transporter/AMP nucleosidase |
| ? | NC_000913 | 2054990 = | 169 (0.840) | intergenic (+31/‑71) | shiA/amn | shikimate transporter/AMP nucleosidase | |||||
| * | ? | NC_000913 | 4542682 = | 71 (0.340) | 4 (0.020) | 4/504 | 17.3 | 4.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 110 (0.550) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||