mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 19 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4363743 | 63 (0.950) | 3 (0.050) | 3/260 | NT | 4.7% | coding (1300/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC |
| ? | NC_000913 | = 4363752 | 61 (0.960) | coding (1291/1698 nt) | dsbD | thiol:disulfide interchange protein and activator of DsbC | |||||
| * | ? | NC_000913 | 3823258 = | 246 (3.720) | 3 (0.050) | 3/264 | NT | 1.2% | coding (859/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| ? | NC_000913 | 3823343 = | 238 (3.680) | coding (944/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase | |||||
| * | ? | NC_000913 | 3795539 = | 240 (3.630) | 6 (0.090) | 5/260 | NT | 2.6% | coding (611/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_000913 | 3795555 = | 221 (3.470) | coding (627/1047 nt) | waaF | ADP‑heptose:LPS heptosyltransferase II | |||||
| * | ? | NC_000913 | = 3783805 | 208 (3.140) | 4 (0.060) | 3/254 | NT | 2.0% | coding (324/468 nt) | secB | protein export chaperone |
| ? | NC_000913 | = 3783825 | 202 (3.250) | coding (304/468 nt) | secB | protein export chaperone | |||||
| * | ? | NC_000913 | = 3774359 | NA (NA) | 6 (0.100) | 6/256 | NT | 2.0% | intergenic (+165/‑65) | mtlA/mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent |
| ? | NC_000913 | = 3774387 | 294 (4.690) | intergenic (+193/‑37) | mtlA/mtlD | mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent | |||||
| * | ? | NC_000913 | 3761270 = | 292 (4.410) | 3 (0.050) | 3/260 | NT | 1.1% | intergenic (‑21/+77) | selA/yibF | selenocysteine synthase/glutathione S‑transferase homolog |
| ? | NC_000913 | 3761292 = | 264 (4.150) | intergenic (‑43/+55) | selA/yibF | selenocysteine synthase/glutathione S‑transferase homolog | |||||
| * | ? | NC_000913 | 3760851 = | 202 (3.050) | 6 (0.090) | 5/262 | NT | 3.1% | coding (399/1392 nt) | selA | selenocysteine synthase |
| ? | NC_000913 | 3760879 = | 184 (2.870) | coding (371/1392 nt) | selA | selenocysteine synthase | |||||
| * | ? | NC_000913 | = 3757352 | 209 (3.160) | 3 (0.050) | 3/264 | NT | 1.5% | coding (476/1152 nt) | yiaY | L‑threonine dehydrogenase |
| ? | NC_000913 | = 3757393 | 194 (3.000) | coding (435/1152 nt) | yiaY | L‑threonine dehydrogenase | |||||
| * | ? | NC_000913 | 3750401 = | 203 (3.070) | 6 (0.090) | 5/260 | NT | 3.0% | coding (316/696 nt) | sgbE | L‑ribulose‑5‑phosphate 4‑epimerase |
| ? | NC_000913 | 3750427 = | 199 (3.130) | coding (342/696 nt) | sgbE | L‑ribulose‑5‑phosphate 4‑epimerase | |||||
| * | ? | NC_000913 | 3739534 = | 220 (3.330) | 6 (0.100) | 4/250 | NT | 2.9% | intergenic (+7/‑171) | malS/avtA | alpha‑amylase/valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase |
| ? | NC_000913 | 3739567 = | 195 (3.190) | intergenic (+40/‑138) | malS/avtA | alpha‑amylase/valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase | |||||