New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 183661	103 (0.650)	13 (0.090)	10/246	NT	11.3%	intergenic (+41/+48)	cdaR/yaeH	carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein
	?	NC_000913	= 183674	109 (0.750)					intergenic (+54/+35)	cdaR/yaeH	carbohydrate diacid regulon transcriptional regulator; autoregulator/UPF0325 family protein

GTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/183505‑183661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattcccctcTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGATT  <  NC_000913/183674‑183528                                                                                                                                                                                                                                                                                                                  GTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTC                                                                                                                                                              <  6:1096669/148‑1    ATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATT                                                                                                                                                           >  6:725070/1‑148        CCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCC                                                                                                                                                       <  5:725070/148‑1          TGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTC                                                                                                                                                     >  5:759888/1‑148          TGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTC                                                                                                                                                     >  8:786341/1‑148                      TTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGC                                                                                                                                         <  6:311644/148‑1                         ATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGA                                                                                                                                      <  7:786341/148‑1                           CGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGG                                                                                                                                    <  5:815438/148‑1                           CGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGG                                                                                                                                    >  6:815438/1‑148                            GTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGGG                                                                                                                                   <  7:183203/148‑1                                                      TTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGGGGA                                                                                                                                 <  5:235083/124‑1                                                      TTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGGGGA                                                                                                                                 >  6:235083/1‑124                                                      TTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAG                                                                                                                                     >  5:282973/1‑120                                                      TTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAG                                                                                                                                     <  6:282973/120‑1                                                           CAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTC                                                                                                                                                              <  7:989580/90‑1                                                           CAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTAAAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTC                                                                                                                                                              >  8:989580/1‑90                                                                                                  ACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGGG                                                                                                                                   >  8:799157/1‑78                                                                                                  ACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGGG                                                                                                                                   <  7:799157/78‑1                                                                                                       ATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGG                                                                                                                                    <  7:405884/72‑1                                                                                                       ATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTCTACCCTTCGGGCTGAGG                                                                                                                                    >  8:405884/1‑72                                                                                                                                                       TCCCCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATAT        <  6:395918/148‑1                                                                                                                                                        CCCCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGT                                                                            >  8:885596/1‑79                                                                                                                                                        CCCCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGT                                                                            <  7:885596/79‑1                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACGTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGC                                    >  6:954820/1‑117                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAA                                >  8:519652/1‑121                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAA                                <  7:519652/121‑1                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGC                                    <  5:954820/117‑1                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTA                                                                        <  7:812752/81‑1                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTA                                                                        >  8:812752/1‑81                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTAC                                                                                           >  7:835700/1‑62                                                                                                                                                          CCTCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTAC                                                                                           <  8:835700/62‑1                                                                                                                                                            TCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGAT   >  7:962760/1‑148                                                                                                                                                            TCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGAT   <  8:193428/148‑1                                                                                                                                                            TCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCA                            >  7:728212/1‑123                                                                                                                                                            TCTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCA                            <  8:728212/123‑1                                                                                                                                                             CTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGATT  <  8:962760/148‑1                                                                                                                                                             CTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGATT  >  8:141039/1‑148                                                                                                                                                             CTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCAT                                                                                 >  6:321243/1‑69                                                                                                                                                             CTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCAT                                                                                 <  5:321243/69‑1                                                                                                                                                                                                                                                                                                                  GTAATACCCTGGAGTATCGGCTTAATCGTATATCGGAACTGACCGGGCTTGATTTGGGCAATTTTGATGACAGGTTGCTGCTGTATGTGGCGTTACAACTGGATGAAGAGCGGTAGGTTATGCGTTAAGGTTGAGGCGGCGCTGGCTCATTCCCCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/183505‑183661 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cattcccctcTACCCTTCGGGCTGAGGGGAATGAGCCAGCGCCGCCTCAACCTTAACGCATAACCTACCGCTCTTCATCCAGTTGTAACGCCACATACAGCAGCAACCTGTCATCAAAATTGCCCAAATCAAGCCCGGTCAGTTCCGATATACGATT  <  NC_000913/183674‑183528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.