New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1682065	113 (0.720)	8 (0.050)	6/252	NT	6.8%	intergenic (‑35/‑94)	ydgC/rstA	GlpM family inner membrane protein/response regulator of RstAB two‑component system
	?	NC_000913	= 1682073	113 (0.760)					intergenic (‑43/‑86)	ydgC/rstA	GlpM family inner membrane protein/response regulator of RstAB two‑component system

CCGGTGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1681789‑1682065 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcagGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGTAGTGCTGTTGATTGGTGTTTTAGCAAAAACGAAAAATTATTATATCGCCGGGCTGATTCCACTTTTCCCGACCTTTGCGCTTATCGCGCATTATATTGTTGCCAGCGAACGCGGCATTGAAGCCTTACGCGCAACCATCATTTTTAGTATGTGGTCGATTATTCCCTATTTTGTTTACCTGGTGTCG  <  NC_000913/1682073‑1681806                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGGGGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCAT                                                                                                                                                                                                                                                                                 <  2:478462/274‑1                                                                                                                                                 GGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATGA                                                                                                                                                                                                                                                               >  8:233030/1‑148                                                                                                                                                 GGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATGA                                                                                                                                                                                                                                                               <  7:233030/148‑1                                                                                                                                                    ATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCAT                                                                                                                                                                                                                                                                                 <  2:37668/127‑1                                                                                                                                                                        ATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATC                                                                                                                                                                                                                                                                                <  6:490574/108‑1                                                                                                                                                                        ATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATC                                                                                                                                                                                                                                                                                >  5:490574/1‑108                                                                                                                                                                                                             ACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATGACTTG                                                                                                                                                                                                                                                           >  5:589168/1‑92                                                                                                                                                                                                             ACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATGACTTG                                                                                                                                                                                                                                                           <  6:589168/92‑1                                                                                                                                                                                                                                  TTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATG                                                                                                                                                                                                                                                                >  7:1103206/1‑66                                                                                                                                                                                                                                  TTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATG                                                                                                                                                                                                                                                                >  7:324590/1‑66                                                                                                                                                                                                                                  TTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATG                                                                                                                                                                                                                                                                <  8:1103206/66‑1                                                                                                                                                                                                                                  TTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGGTATTCTACTGATG                                                                                                                                                                                                                                                                <  8:324590/66‑1                                                                                                                                                                                                                                                                               TCATCAGGTAGTTTAATTATGACTTGTTTGGGAAGGTTTAAGGTCAAAAGATGTGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGTAGTGCTGTTGATTGGTGTTTTAGCAAAAACGAAAAATTATTATATCGCCGGGCTGATTCCACTTTTCCCGACCTTTGCGCTTATCGCGCATTATATTGTTGCCAGCGAACGCGGCATTGAAGCCTTACGCGCAACCATCATTTTTAGTATGTGGTCGATTATTCCCTATTTTGTTTACCTGGTGTCG  <  4:506688/275‑1                                                                                                                                                                                                                                                                                 ATCAGGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGT                                                                                                                                                                                             <  6:434343/86‑1                                                                                                                                                                                                                                                                                 ATCAGGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGT                                                                                                                                                                                             >  5:434343/1‑86                                                                                                                                                                                                                                                                                   CAGGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTA                                                                                                                                                                                                                       <  6:162611/58‑1                                                                                                                                                                                                                                                                                   CAGGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTA                                                                                                                                                                                                                       >  5:162611/1‑58                                                                                                                                                                                                                                                                                     GGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGTAGTGCTGTTGATTGGTG                                                                                                                                                                            <  7:363921/99‑1                                                                                                                                                                                                                                                                                     GGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGTAGTGCTGTTGATTGGTG                                                                                                                                                                            >  8:363921/1‑99                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGGTGAAATACCACAGCGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1681789‑1682065 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatcagGTATTCTACTGATGACTTGTTATGGAAGTGTTAAGGTAAAAAGATGGGGCTGGTAATCAAAGCCGCGCTCGGTGCGCTGGTAGTGCTGTTGATTGGTGTTTTAGCAAAAACGAAAAATTATTATATCGCCGGGCTGATTCCACTTTTCCCGACCTTTGCGCTTATCGCGCATTATATTGTTGCCAGCGAACGCGGCATTGAAGCCTTACGCGCAACCATCATTTTTAGTATGTGGTCGATTATTCCCTATTTTGTTTACCTGGTGTCG  <  NC_000913/1682073‑1681806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.