BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1682065	113 (0.720)	8 (0.050)	6/252	NT	6.8%	intergenic (‑35/‑94)	ydgC/rstA	GlpM family inner membrane protein/response regulator of RstAB two‑component system
*	?	NC_000913	= 1682073	113 (0.760)	8 (0.050)	6/252	NT	6.8%	intergenic (‑43/‑86)	ydgC/rstA	GlpM family inner membrane protein/response regulator of RstAB two‑component system

Only 100 of 139 total aligned reads displayed.

CGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTACCTGGCAAAACATGATATGCAGGTTACCGTAGAGCCGCGCGGCGACCAGGCCGAAGAAACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGAC  >  NC_000913/1681806‑1682343

cGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCACATCTTTTGACCTTAAACCTTCCCAAACAAGTCATAATTAAACTACctgatga                                                                                                                                                                                                                                                                         <  4:506688‑M2/275‑8 (MQ=255)

    atcAGGTAAACAAAATGGGGAAGAATCGAACACATACTAAAAAGGAGGTTTGCGCGTAAGTCTTCAATGCCGCGTTCTCTGGCAACAAGAGAATGCGCGATAAGCGCAAAGGGCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGGTTTTGCTAAAACACCAATCAACAGCACTACCAGCGAACCGAGCGAGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACATTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAAc                                                                                                                                                                                                                                                                     <  4:141681/273‑1 (MQ=255)

             aCAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGa                                                                                                                                                                                                                                                            >  4:95528/1‑275 (MQ=255)

              aaaaaaaGGGAATAATCCACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGaa                                                                                                                                                                                                                                                           <  4:109174/274‑1 (MQ=255)

                           aatCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACATTAACACTTCCATAACAAGTCATCAGTAGAATACATGATGAAAACTTGTTTAGAAACGATTGAAagta                                                                                                                                                                                                                                              >  2:541786/1‑275 (MQ=255)

                                       acaaaaatTGAGGGTTGCGCGTAAGGCTTAAATGCCCGGTGTGCTGTAAACAAAAAAATGAGCGATAAGCGAAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCTAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAgc                                                                                                                                                                                                                                  <  4:536621/272‑1 (MQ=255)

                                                                                   tGGCAACAATATAATGAGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGaa                                                                                                                                                                                      <  2:269338/275‑1 (MQ=255)

                                                                                   tGGCAAAAATATAATGCGGGATAAGGGCAAAGGTCGGGAAAAATGGAATCAGCCCGGCGATATAATAATTTTTCGGTTTTGCTAAAACACCCATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGaa                                                                                                                                                                                      <  4:471428/275‑1 (MQ=255)

                                                                                    ggaaacaaTATAATGCGCGAGAAGCGCAAAGGGCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAac                                                                                                                                                                                     <  1:155266/272‑1 (MQ=255)

                                                                                       aacaaTATAATTGGCGATAAGCGCAAAGGGCGGGAAAAGTGTAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAacac                                                                                                                                                                                   <  2:506689/274‑1 (MQ=255)

                                                                                                       aTAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGAAGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATAAACACAATCGTTTTTGTGGAAg                                                                                                                                                                  >  4:400498/1‑275 (MQ=255)

                                                                                                                         naaaGTGGAATCATCCCGGCCATATCATAATTTTTCGTTTTTGCTAAAACACCANTCAANAGCACTACCAGCGCACCGAGCGCNGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGa                                                                                                                                                                                                                    <  4:541785/206‑1 (MQ=255)

                                                                                                                               ggAATCAGCCCAGCGATATAATAATTTTTCCTTTTTGCTAAAACCCCAATCAACAGCCCTACCAACGACCCGAGCGCTGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTTTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGa                                                                                                                                          <  4:238315/275‑1 (MQ=255)

                                                                                                                                 aaTCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGaaa                                                                                                                                                                                                                                                                       <  8:842038/148‑1 (MQ=255)

                                                                                                                                                    taatTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGaa                                                                                                                                                                                                                                                           <  8:807285/141‑1 (MQ=255)

                                                                                                                                                               ttttGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGaaaa                                                                                                                                                                                                                                                                      <  7:911617/119‑1 (MQ=255)

                                                                                                                                                               ttttGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGaaaa                                                                                                                                                                                                                                                                      >  8:911617/1‑119 (MQ=255)

                                                                                                                                                               ttttGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACt                                                                                                                                                                                                                                                                    >  8:633985/1‑121 (MQ=255)

                                                                                                                                                               ttttGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACg                                                                                                                                                                                                                                                        <  8:1006732/133‑1 (MQ=255)

                                                                                                                                                                   gCTAAAACACCAATCAACAGCACTACCAGCGCACCGTGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTACCTGGCAAAACATGATATGCAGGTTa                                                                                                      <  2:400499/275‑1 (MQ=255)

                                                                                                                                                                      aaaaCACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTg                                                                                                                                                                                                                                                    <  6:33995/130‑1 (MQ=255)

                                                                                                                                                                          cacCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACc                                                                                                                                                                                                                                                                               <  7:363921‑M2/99‑2 (MQ=255)

                                                                                                                                                                          cacCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACc                                                                                                                                                                                                                                                                               >  8:363921‑M2/1‑98 (MQ=255)

                                                                                                                                                                              aaTCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGCTTGCCGCGTCCCTGGCAAAACATGATATGCAGGTTACCGTAGAGcc                                                                                            >  2:489570/1‑274 (MQ=255)

                                                                                                                                                                               aTCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGt                                                                                                                                                                                                                                                                 <  7:737771/108‑1 (MQ=255)

                                                                                                                                                                               aTCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGaaa                                                                                                                                                                                                                                                          >  6:733132/1‑115 (MQ=255)

                                                                                                                                                                               aTCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGaaa                                                                                                                                                                                                                                                          <  5:733132/115‑1 (MQ=255)

                                                                                                                                                                                tCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATagta                                                                                                                                                                                                                                              >  5:404997/1‑126 (MQ=255)

                                                                                                                                                                                   aCAGCACTACCAGCGCACCGAGCGCGGCTTTGCTTACAAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGTTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTACCTGGCAAAACATGATATGCAGGTTACCGTAGAGCcgcgcg                                                                                       <  4:86525/274‑1 (MQ=255)

                                                                                                                                                                                   aCAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTaaaa                                                                                                                                                                                                                                       >  7:792330/1‑130 (MQ=255)

                                                                                                                                                                                   aCAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTaaaa                                                                                                                                                                                                                                       <  8:792330/130‑1 (MQ=255)

                                                                                                                                                                                   aCAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTAt                                                                                                                                                                                                                         >  7:266294/1‑144 (MQ=255)

                                                                                                                                                                                         cTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGATTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGttt                                                                                                                                                                                                               >  7:344890/1‑148 (MQ=255)

                                                                                                                                                                                           aCCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACctgat                                                                                                                                                                                                                                                                           <  6:434343‑M2/86‑6 (MQ=255)

                                                                                                                                                                                           aCCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACctgat                                                                                                                                                                                                                                                                           >  5:434343‑M2/1‑81 (MQ=255)

                                                                                                                                                                                                cgcACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGa                                                                                                                                                                                                                                                       <  7:1080781/101‑1 (MQ=255)

                                                                                                                                                                                                cgcACCGAGCGCGGCTTTGATTACCAGCCCCATCTGTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGa                                                                                                                                                                                                                                                       >  8:1080781/1‑101 (MQ=255)

                                                                                                                                                                                                  cACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATagtaagt                                                                                                                                                                                                                                           >  7:891313/1‑111 (MQ=255)

                                                                                                                                                                                                  cACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATagtaagt                                                                                                                                                                                                                                           <  8:891313/111‑1 (MQ=255)

                                                                                                                                                                                                    ccGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGAt                                                                                                                                                                                                                                                  >  8:312585/1‑102 (MQ=255)

                                                                                                                                                                                                    ccGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGAt                                                                                                                                                                                                                                                  <  7:312585/102‑1 (MQ=255)

                                                                                                                                                                                                    ccGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTACCTGGCAAAACATGATATGCAGGTTACCGTAGAGCCGCGCGGCGACCAGGCCGAAGaaa                                                                     >  4:327222/1‑275 (MQ=255)

                                                                                                                                                                                                     cGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGAt                                                                                                                                                                                                                                                      <  7:879202/97‑1 (MQ=255)

                                                                                                                                                                                                             gCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGGATACCTGATGAAAACTTGTTTAGAAACGATTGATagtaag                                                                                                                                                                                                                                            >  5:915389/1‑99 (MQ=255)

                                                                                                                                                                                                             gCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATagtaag                                                                                                                                                                                                                                            <  6:915389/99‑1 (MQ=255)

                                                                                                                                                                                                                ttGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTa                                                                                                                                                                                                                          <  5:153282/114‑1 (MQ=255)

                                                                                                                                                                                                                ttGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATg                                                                                                                                                                                        >  6:934666/1‑148 (MQ=255)

                                                                                                                                                                                                                   aTTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCTGTAGAATACCTGATGAAAACTTGTTTAGaaa                                                                                                                                                                                                                                                          >  5:319211/1‑79 (MQ=255)

                                                                                                                                                                                                                   aTTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGaaa                                                                                                                                                                                                                                                          <  6:319211/79‑1 (MQ=255)

                                                                                                                                                                                                                    ttACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATagta                                                                                                                                                                                                                                              >  8:230838/1‑90 (MQ=255)

                                                                                                                                                                                                                     tACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACctg                                                                                                                                                                                                                                                                             <  6:162611‑M2/58‑4 (MQ=255)

                                                                                                                                                                                                                     tACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACctg                                                                                                                                                                                                                                                                             >  5:162611‑M2/1‑55 (MQ=255)

                                                                                                                                                                                                                      aCCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCgg                                                                                                                                                                                                                              <  6:1036885/104‑1 (MQ=255)

                                                                                                                                                                                                                      aCCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCgg                                                                                                                                                                                                                              >  5:1036885/1‑104 (MQ=255)

                                                                                                                                                                                                                       ccAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTa                                                                                                                                                                                 <  5:934666/148‑1 (MQ=255)

                                                                                                                                                                                                                        cAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGttttt                                                                                                                                                                                                             >  7:4207/1‑119 (MQ=255)

                                                                                                                                                                                                                        cAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGttttt                                                                                                                                                                                                             <  8:4207/119‑1 (MQ=255)

                                                                                                                                                                                                                             ccATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCgg                                                                                                                                                                                                                              >  6:134186/1‑97 (MQ=255)

                                                                                                                                                                                                                                tCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTtata                                                                                                                                                                                                          >  5:811015/1‑114 (MQ=255)

                                                                                                                                                                                                                                tCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGtt                                                                                                                                                                                           <  7:1054908/129‑1 (MQ=255)

                                                                                                                                                                                                                                tCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAac                                                                                                                                                                                     <  7:422035/135‑1 (MQ=255)

                                                                                                                                                                                                                                    tttACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGttt                                                                                                                                                                                                                                                               >  6:724942/1‑57 (MQ=255)

                                                                                                                                                                                                                                    tttACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGttt                                                                                                                                                                                                                                                               <  5:724942/57‑1 (MQ=255)

                                                                                                                                                                                                                                    tttACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGttttt                                                                                                                                                                                                             <  7:579678/107‑1 (MQ=255)

                                                                                                                                                                                                                                    tttACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGttttt                                                                                                                                                                                                             >  8:579678/1‑107 (MQ=255)

                                                                                                                                                                                                                                     ttACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCg                                                                                                                                                                                                   >  6:839676/1‑116 (MQ=255)

                                                                                                                                                                                                                                     ttACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCg                                                                                                                                                                                                   <  5:839676/116‑1 (MQ=255)

                                                                                                                                                                                                                                          ttAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTatat                                                                                                                                                                                                         <  8:3892/105‑1 (MQ=255)

                                                                                                                                                                                                                                          ttAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGt                                                                                                                                                                                            <  8:1014066/118‑1 (MQ=255)

                                                                                                                                                                                                                                          ttAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGt                                                                                                                                                                                            >  7:1014066/1‑118 (MQ=255)

                                                                                                                                                                                                                                          ttAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAgatga                                                                                                                                                              >  5:242270/1‑148 (MQ=255)

                                                                                                                                                                                                                                           tAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTACCTGGCAAAACATGATATGCAGGTTACCGTAGAGCCGCGCGGCGACCAGGCCGAAGAAACCATTTTGc                                                            >  2:515763/1‑245 (MQ=255)

                                                                                                                                                                                                                                              cacTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGcc                                                                                                                                     <  2:562149/169‑1 (MQ=255)

                                                                                                                                                                                                                                               acTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGa                                                                                                                                          <  2:435165/163‑1 (MQ=255)

                                                                                                                                                                                                                                                cTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTtg                                                                                                                                                                        >  7:133346/1‑132 (MQ=255)

                                                                                                                                                                                                                                                cTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGa                                                                                                                                                        >  8:1045656/1‑148 (MQ=255)

                                                                                                                                                                                                                                                  tCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACa                                                                                                                                                                                                                                    <  6:173233/70‑1 (MQ=255)

                                                                                                                                                                                                                                                         cAAGTCATCAGTAGAATACctgatgacttgttatggaagtgttaaggtaaaaagatggggctggtaatcaaagccgcgctcggtgcgctggt                                                                                                                                                                                                       >  5:589168‑M2/1‑19 (MQ=255)

                                                                                                                                                                                                                                                          aaGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCa                                                                                                                                              >  6:1015051/1‑148 (MQ=255)

                                                                                                                                                                                                                                                           aGTCATCAGTAGAGTACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAac                                                                                                                                                                                     >  6:8046/1‑108 (MQ=255)

                                                                                                                                                                                                                                                           aGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGtt                                                                                                                                                                                           <  5:334827/102‑1 (MQ=255)

                                                                                                                                                                                                                                                           aGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTACCTGGCAAAACATGATATGc                                                                                                            >  3:30347/1‑181 (MQ=255)

                                                                                                                                                                                                                                                           aGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGCAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGtt                                                                                                                                                                                           >  6:334827/1‑102 (MQ=255)

                                                                                                                                                                                                                                                             tcatcaGTAGAATACctgatgacttgttatggaagtgttaaggtaaaaagatggggctggtaatcaaagccgcgctcggtgcgctggtagtgctgttgattggtgttttagcaaaaacgaaaaattattatatcgccgggctgattcc                                                                                                                                           <  7:233030‑M2/148‑134 (MQ=255)

                                                                                                                                                                                                                                                             tcatcaGTAGAATACctgatgacttgttatggaagtgttaaggtaaaaagatggggctggtaatcaaagccgcgctcggtgcgctggtagtgctgttgattggtgttttagcaaaaacgaaaaattattatatcgccgggctgattcc                                                                                                                                           >  8:233030‑M2/1‑15 (MQ=255)

                                                                                                                                                                                                                                                              catcaGTAGAATACctgatgacttgttatggaagtgttaaggtaaaaagatggggctggtaatcaa                                                                                                                                                                                                                            <  8:1103206‑M2/66‑53 (MQ=255)

                                                                                                                                                                                                                                                              catcaGTAGAATACctgatgacttgttatggaagtgttaaggtaaaaagatggggctggtaatcaa                                                                                                                                                                                                                            <  8:324590‑M2/66‑53 (MQ=255)

                                                                                                                                                                                                                                                              catcaGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTa                                                                                                                                                                                          >  2:45496/1‑100 (MQ=255)

                                                                                                                                                                                                                                                              catcaGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTACCTGGCAAAACATGATATGCAGGTTACCGTAGAGCCGCGCGGCGACCAGGCCGAAGAAACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGa           >  2:345315/1‑275 (MQ=255)

                                                                                                                                                                                                                                                               atcaGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTACCTGGCAAAACATGATATGCAGGt                                                                                                        <  1:30347/181‑1 (MQ=255)

                                                                                                                                                                                                                                                                tcaGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCt                                                                                                                                                                                                       <  6:976013/85‑1 (MQ=255)

                                                                                                                                                                                                                                                                  aGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGaa                                                                                                                                                                                      <  4:45495/100‑1 (MQ=255)

                                                                                                                                                                                                                                                                   gTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTACCTGGCAAAACATGATATGCAGGt                                                                                                        <  2:171620/177‑1 (MQ=255)

                                                                                                                                                                                                                                                                    tAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTtg                                                                                                                                                                        <  6:848442/112‑1 (MQ=255)

                                                                                                                                                                                                                                                                    tAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTtg                                                                                                                                                                        >  5:848442/1‑112 (MQ=255)

                                                                                                                                                                                                                                                                       aaTACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCa                                                                                                                                              <  7:218321/135‑1 (MQ=255)

                                                                                                                                                                                                                                                                       aaTACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCa                                                                                                                                              >  8:218321/1‑135 (MQ=255)

                                                                                                                                                                                                                                                                       aaTACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTACCTGGCAAAACATGATATGCAGGTTACCGTAGAGCCGCGCGGCGACCAGGCCGAAGAAACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCCACCAGGCAAGGACGGCATGAc  >  4:200755/1‑275 (MQ=255)

                                                                                                                                                                                                                                                                         tACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTAc                                                                                                                               <  6:551246/148‑1 (MQ=255)

                                                                                                                                                                                                                                                                           ccTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATc                                                                                                                                                                               >  4:431830/1‑98 (MQ=255)

CGACACCAGGTAAACAAAATAGGGAATAATCGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCCCATCTTTTTACCTTAACACTTCCATAACAAGTCATCAGTAGAATACCTGATGAAAACTTGTTTAGAAACGATTGATAGTAAGTAAAAACAGCGCGGTGTATTGTGACGTTTTTATATCTACCGTGAATGTTATGAACACTATCGTATTTGTGGAAGATGATGCGGAAGTCGGTTCACTGATTGCCGCGTACCTGGCAAAACATGATATGCAGGTTACCGTAGAGCCGCGCGGCGACCAGGCCGAAGAAACCATTTTGCGAGAAAATCCGGATTTGGTGTTACTCGACATCATGCTACCAGGCAAGGACGGCATGAC  >  NC_000913/1681806‑1682343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.