New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 284691111 (0.700)6 (0.040) 6/258 NT 5.2% coding (1491/1968 nt) yagF CP4‑6 prophage; dehydratase family protein
?NC_000913 = 284723 109 (0.710)coding (1523/1968 nt) yagF CP4‑6 prophage; dehydratase family protein

Only 100 of 148 total aligned reads displayed.

GTGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTGGCGGGCGGGCCGATTGGCAAGCTGCGCGATAACGACATCATCGAGATTGCCGTGGATCGTCTGACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAAC  >  NC_000913/284424‑284964
                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                 
gTGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGgtggtg                                                                                                                                                                                                                                                                             >  4:244146/1‑274 (MQ=255)
            gCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGAACAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCggg                                                                                                                                                                                                                                                                 <  2:402968/274‑1 (MQ=255)
                          agCCGGATGACGTGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCGGGGCGATATCATGGTGGGGGACGGCGGCGGGGCGGgaggcaccgga                                                                                                                                                                                                                                                  >  4:362699/1‑274 (MQ=255)
                          aGCCGGATGACGTGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGTTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGCGATTGTGTAGGGCGATGTCATGGTGGTGATCGGCGGCGGGCCGGCCGGCTCCGGc                                                                                                                                                                                                                                                  <  2:362427‑M2/275‑2 (MQ=255)
                           gCCGGATGACGTGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGc                                                                                                                                                                                                                                                  >  2:287857‑M2/1‑273 (MQ=255)
                           gCCGGATGACGTGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGc                                                                                                                                                                                                                                                  >  2:244147‑M2/1‑273 (MQ=255)
                                          ccggccgccGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTAc                                                                                                                                                                                                                                   <  2:311897/271‑1 (MQ=255)
                                             gccgccGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGGGTTTGTCTCGGAAGCGACGGCGATCAAGGCGAACACGCGGGAAGAGATTGTGCAGGGCGCTATCATGGTGGTGCTCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTAcaccc                                                                                                                                                                                                                               >  4:482238/1‑271 (MQ=255)
                                                               agggAAAGGGCTGACCTGGACGGTCGACTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGAGCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAg                                                                                                                                                                                                              <  2:67918/271‑1 (MQ=255)
                                                                            aCCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTgggg                                                                                                                                                                                                <  2:362700/275‑1 (MQ=255)
                                                                                                         cATCGCTCCGGAAGGTTCGGTGATGAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATgcg                                                                                                                                                                    <  2:356028/274‑1 (MQ=255)
                                                                                                           tggttCCGGGAGGGTGGGTGAGCAAGGCCCAGGGGAGTGAGCCGTCGGGGGGGGGCGAAGATGGGGTAGACCACCAACCCGGCCGGGTGGGGGGGTTTGTCTCGGAAGCGCAGGCGATGAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATgcgcg                                                                                                                                                                  <  4:212364/270‑1 (MQ=255)
                                                                                                                 cgggtggggcGGTGGACAATGCCACGGAGATCGACCAGGTGGTGGTGGGCGAAGAGGGCGGATACCACCACACCGGCCGGGTGCGGGTGTTTTACGCGGAAGCTCAGGCGAGCAAGGCGATCAAGCGGGAAGAGATTGTGAAGGGCGATATCATGGCGGTGATCGCCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTATCAGCTCACCTCCGCGCTAATGCATATTTCGTGGGGCAAGACTGTGTCGCTCATCACCGATGCGCGCTtctc                                                                                                                                                            <  4:41723/265‑1 (MQ=255)
                                                                                                                                             gATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCcg                                                                                                                                                                                                                      <  2:171719/188‑1 (MQ=255)
                                                                                                                                               tCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTc                                                                                                                                                                                                                                                            <  7:105730/148‑1 (MQ=255)
                                                                                                                                                cGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATcggcggc                                                                                                                                                                                                                                                                    >  7:891009/1‑139 (MQ=255)
                                                                                                                                                      gTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCCTCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGc                                                                                                                      >  2:47897/1‑275 (MQ=255)
                                                                                                                                                          gtggtgGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCAtggt                                                                                                                                                                                                                                                                                 <  8:662197/116‑1 (MQ=255)
                                                                                                                                                          gtggtgGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCAtggt                                                                                                                                                                                                                                                                                 >  7:662197/1‑116 (MQ=255)
                                                                                                                                                                     aGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGAcc                                                                                                                                                                                                                                      >  8:978778/1‑148 (MQ=255)
                                                                                                                                                                     aGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTggcgg                                                                                                       >  2:543797/1‑275 (MQ=255)
                                                                                                                                                                      gATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAagag                                                                                                                                                                                                                                         >  5:716236/1‑144 (MQ=255)
                                                                                                                                                                       aTGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATcggc                                                                                                                                                                                                                                                                       >  6:751721/1‑113 (MQ=255)
                                                                                                                                                                       aTGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATcggc                                                                                                                                                                                                                                                                       <  5:751721/113‑1 (MQ=255)
                                                                                                                                                                       aTGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTa                                                                                                                                                                                                                                    >  7:457724/1‑148 (MQ=255)
                                                                                                                                                                          gCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTggcgggc                                                                                                     >  2:205970/1‑272 (MQ=255)
                                                                                                                                                                           cGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAag                                                                                                                                                                                                                                           <  7:95946/137‑1 (MQ=255)
                                                                                                                                                                           cGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAag                                                                                                                                                                                                                                           >  8:95946/1‑137 (MQ=255)
                                                                                                                                                                                  caccacACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCg                                                                                                                                                                                                                                                              >  8:151680/1‑111 (MQ=255)
                                                                                                                                                                                   accacACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGca                                                                                                                                                                                                                                                 <  8:674897‑M2/123‑3 (MQ=255)
                                                                                                                                                                                   accacACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAgaga                                                                                                                                                                                                                                        <  7:70586/132‑1 (MQ=255)
                                                                                                                                                                                   accacACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAgaga                                                                                                                                                                                                                                        >  8:70586/1‑132 (MQ=255)
                                                                                                                                                                                   accacACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTc                                                                                                                                                                                                                        >  5:904728/1‑148 (MQ=255)
                                                                                                                                                                                    ccacACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTcc                                                                                                                                                                                                                       >  7:295985/1‑148 (MQ=255)
                                                                                                                                                                                       cacCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCatat                                                                                                                                                                                                         >  1:139552/1‑159 (MQ=255)
                                                                                                                                                                                       cacCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTGGCGGGCGGGCCGATTGGCAAGc                                                                                     >  2:464106/1‑275 (MQ=255)
                                                                                                                                                                                           ggccggGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATcggcggcgg                                                                                                                                                                                                                                                                  >  7:387805/1‑98 (MQ=255)
                                                                                                                                                                                           ggccggGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCg                                                                                                                                                                                                     <  3:139552/159‑1 (MQ=255)
                                                                                                                                                                                            gccggGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCCAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGCTATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCCTGGACGAGCCCTACCAGCTCACCTCCGCGCTAAAGCATACCTCGGGGGGCAAGACGGTGTCGCTCATTACCGATGCCCGCTTCTCGGGCGTGTCCACCGGCCCCTGCTTCCGCCCCGCTTCCCCGGAGGCGCTGGCGGGCGTGCCGATTGGCAACCtccc                                                                                 >  4:171790/1‑271 (MQ=255)
                                                                                                                                                                                            gccggGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGgtggtg                                                                                                                                                                                                                                                                             >  8:328628/1‑86 (MQ=255)
                                                                                                                                                                                            gccggGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGgtggtg                                                                                                                                                                                                                                                                             <  7:328628/86‑1 (MQ=255)
                                                                                                                                                                                                     gggtagttGTGTAGGAACGGCAGGGGATGAAGGCGATCAAGGGGGAAGAGATGGTGCAGGGAGATATCATGGTGGGGATCGGCGGCGGGCCATCCGGCACCGGCATGGAAGGGACCTACCAGCTCACCTCCGCGCTAAAGCATAGCTCGTGGGGCAAGACGGTGTCGATCATCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTGGCGGGCGGGCCGATTGGCAAGCTGCGCGATAACGAc                                                                       <  1:3687/269‑1 (MQ=255)
                                                                                                                                                                                                        tgtTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTg                                                                                                                                                                                                   <  7:978778/148‑1 (MQ=255)
                                                                                                                                                                                                           ttGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccg                                                                                                                                                                                                                                                          >  2:484891/1‑90 (MQ=255)
                                                                                                                                                                                                               ctcGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTccggcac                                                                                                                                                                                                                                                      <  4:484890/90‑1 (MQ=255)
                                                                                                                                                                                                                gggggaGCGCAGGCGATCAGAGGTAGCAAAGGGGGAGAGGTGGTGCGGGGGGAGATGAGGGTGGGGTGCGGGGGCGGGGCGGCCGGGCTCGGAATGGAAGAGAACTACCAGCTGACCTCCGGGCTAAAGCATATCTCGTGGGGCAAGACGGTGGCGCTCAGCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTGGCGGGCGGGCCGATTGGCAAGCTGCGCGATAACGACATCATCgaga                                                             <  4:251848/269‑1 (MQ=255)
                                                                                                                                                                                                                 cGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGc                                                                                                                                                                                                                               <  5:294965/111‑1 (MQ=255)
                                                                                                                                                                                                                 cGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGc                                                                                                                                                                                                                               >  6:294965/1‑111 (MQ=255)
                                                                                                                                                                                                                 cGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGAc                                                                                                                                                                                          <  8:457724/148‑1 (MQ=255)
                                                                                                                                                                                                                  ggAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGca                                                                                                                                                                                                                                                 <  5:356883‑M2/92‑3 (MQ=255)
                                                                                                                                                                                                                  ggAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGca                                                                                                                                                                                                                                                 >  6:356883‑M2/1‑90 (MQ=255)
                                                                                                                                                                                                                     aGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAg                                                                                                                                                                                                              <  7:960337/124‑1 (MQ=255)
                                                                                                                                                                                                                     aGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTg                                                                                                                                                                                                   >  8:862239/1‑135 (MQ=255)
                                                                                                                                                                                                                         cAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGc                                                                                                                                                                                  >  8:894143/1‑148 (MQ=255)
                                                                                                                                                                                                                          aggcgatcaaggcgatcaAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGt                                                                                                                                                                                                    >  6:765027/1‑129 (MQ=255)
                                                                                                                                                                                                                           ggcgatcaaggcgatcaaGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAg                                                                                                                                                                                            >  7:544348/1‑136 (MQ=255)
                                                                                                                                                                                                                           ggcgatcaaggcgatcaaGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAg                                                                                                                                                                                            <  8:544348/136‑1 (MQ=255)
                                                                                                                                                                                                                           ggcgatcaaggcgatcaaGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGa                                                                                                                                                                                           <  8:869138/137‑1 (MQ=255)
                                                                                                                                                                                                                           ggcgatcaaggcgatcaaGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGa                                                                                                                                                                                           >  7:869138/1‑137 (MQ=255)
                                                                                                                                                                                                                             cgatcaaggcgatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCAc                                                                                                                                                                                                                           >  6:195723/1‑103 (MQ=255)
                                                                                                                                                                                                                             cgatcaaggcgatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCAc                                                                                                                                                                                                                           <  5:195723/103‑1 (MQ=255)
                                                                                                                                                                                                                             cgatcaaggcgatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCAc                                                                                                                                                                                                                           >  8:604118/1‑103 (MQ=255)
                                                                                                                                                                                                                               atcaaggcgatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGgt                                                                                                                                                                                       >  8:508292/1‑137 (MQ=255)
                                                                                                                                                                                                                                 caaggcgatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGccggtgccggacggcccgccgccgatcaccacca                                                                                                                                                                                                                                                 >  5:673879‑M1/1‑43 (MQ=255)
                                                                                                                                                                                                                                 caaggcgatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGccggtgccggacggcccgccgccgatcaccacca                                                                                                                                                                                                                                                 <  6:673879‑M1/77‑35 (MQ=255)
                                                                                                                                                                                                                                 caaggcgatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGca                                                                                                                                                                                                                                                 >  7:994180‑M2/1‑75 (MQ=255)
                                                                                                                                                                                                                                    ggcgatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGccggtgccggacggcccgccgccgatcaccacc                                                                                                                                                                                                                                                  <  7:201784‑M1/73‑34 (MQ=255)
                                                                                                                                                                                                                                    ggcgatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCg                                                                                                                                                                                                     >  6:126949/1‑118 (MQ=255)
                                                                                                                                                                                                                                    ggcgatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCg                                                                                                                                                                                                     <  5:126949/118‑1 (MQ=255)
                                                                                                                                                                                                                                     gcgatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAagag                                                                                                                                                                                                                                         <  8:1059192/81‑1 (MQ=255)
                                                                                                                                                                                                                                       gatcaagCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATgcg                                                                                                                                                                    <  7:846268/148‑1 (MQ=255)
                                                                                                                                                                                                                                         tcaagCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGc                                                                                                                                                                                                                                                                <  7:129031/54‑1 (MQ=255)
                                                                                                                                                                                                                                         tcaagCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGc                                                                                                                                                                                                                                                                >  8:129031/1‑54 (MQ=255)
                                                                                                                                                                                                                                            agCGGGAAGAGATTGTGCAGGGCGATATCATGccggtgccggacggcccgccgccgatcacc                                                                                                                                                                                                                                                     <  7:1117695‑M1/62‑31 (MQ=255)
                                                                                                                                                                                                                                              cGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTGGCGGGCGGGCCGATTGGCAAGCTGCGCGATAACGACATCATCGAGATTGCCGTGGATCGTCTGACGTTAACTGGCAg                              >  2:135010/1‑275 (MQ=255)
                                                                                                                                                                                                                                                ggAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCata                                                                                                                                                                                                          >  5:104629/1‑101 (MQ=255)
                                                                                                                                                                                                                                                ggAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCata                                                                                                                                                                                                          <  6:104629/101‑1 (MQ=255)
                                                                                                                                                                                                                                                  aaGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAagag                                                                                                                                                                                                                                         <  7:585045/68‑1 (MQ=255)
                                                                                                                                                                                                                                                  aaGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACgg                                                                                                                                                                                        <  8:426912/117‑1 (MQ=255)
                                                                                                                                                                                                                                                    gagaTTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCtcatc                                                                                                                                                                             >  5:468670/1‑126 (MQ=255)
                                                                                                                                                                                                                                                    gagaTTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCtcatc                                                                                                                                                                             <  6:468670/126‑1 (MQ=255)
                                                                                                                                                                                                                                                           tgCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGAt                                                                                                                                                                       >  6:589307/1‑125 (MQ=255)
                                                                                                                                                                                                                                                           tgCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGAt                                                                                                                                                                       <  5:589307/125‑1 (MQ=255)
                                                                                                                                                                                                                                                               gggCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGa                                                                                                                                                                                                                                             <  8:320430/51‑1 (MQ=255)
                                                                                                                                                                                                                                                                ggggttatCAGGGTGGGGATCGCGGGCGGGCCGCCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCGGCGCTAAGGCATATCTCGGGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTGGCGGGCGGGCCGATTGGCAAGCTGCGCGATAACGACATCATCGAGATTGCCGTGGATCGTCTGACGTTAACTGGCAGCGTGAACTTCATCGGCa             <  4:464105/269‑1 (MQ=255)
                                                                                                                                                                                                                                                                 gCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCggg                                                                                                                                                         <  7:480016/133‑1 (MQ=255)
                                                                                                                                                                                                                                                                 gCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACggg                                                                                                                                             <  8:273729/145‑1 (MQ=255)
                                                                                                                                                                                                                                                                 gCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACggg                                                                                                                                             >  7:273729/1‑145 (MQ=255)
                                                                                                                                                                                                                                                                     tatCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTGGCGGGCGGGCCGATTGGCAAGCTGCGCGATAACGACATCATCGAGATTGCCGTGGATCGTCTGACGTTAACTGGCAGCGTGAACTTCATCGGCACcgcg        >  2:138369/1‑274 (MQ=255)
                                                                                                                                                                                                                                                                          tggtggTGATCGGCGGCGGGCCGTCCGGCACCGGcatgatatcgccctgcacaatctcttcccgcttgatcgccttg                                                                                                                                                                                                        <  6:673879‑M2/77‑44 (MQ=255)
                                                                                                                                                                                                                                                                          tggtggTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGTGCTTCTCGGGCgtg                                                                                                                                                     >  5:920135/1‑128 (MQ=255)
                                                                                                                                                                                                                                                                          tggtggTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCgtg                                                                                                                                                     <  6:920135/128‑1 (MQ=255)
                                                                                                                                                                                                                                                                          tggtggTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTGGCGGGCGGGCCGATTGGCACGCTGCGCGATAACGACATCATCGAGATTGCCGTGGATCGTCTGACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAAc  >  2:383629/1‑275 (MQ=255)
                                                                                                                                                                                                                                                                          tggtggTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTGGCGGGCGGGCCGAGTGGCAAGCTGCGAGATAACGACATCATCGAGATTGCCGTGGACCGGCTGACGTCAACTGGCAGCGTGAAATTCATCGGCACGGGGGAAAAc  >  1:140859/1‑275 (MQ=255)
                                                                                                                                                                                                                                                                          tgccggtgccggacggcccgccgccgatcaccaccatgatatcgccctgcacaatctcttcccgcttgatcgccttgatcgcctgcgcttccgagacaaacacccgcacccggccggtgtggt                                                                                                                                                          >  7:674897‑M1/1‑2 (MQ=255)
                                                                                                                                                                                                                                                                          tgccggtgccggacggcccgccgccgatcaccaccatgatatcgccctgcacaatctcttcccgcttgatcgccttg                                                                                                                                                                                                        <  8:994180‑M1/77‑76 (MQ=255)
                                                                                                                                                                                                                                                                           ggtggtGATCGGCGGCGGGCCGTCCGGCACCGGcatgatatcgccctgcacaatctcttcccgcttgatcgcc                                                                                                                                                                                                           >  8:201784‑M2/1‑33 (MQ=255)
                                                                                                                                                                                                                                                                           ggtggtGATCGGCGGCGGGCCGTCCGGCACCGGcatgatatcgccctgcacaatctcttcccgcttgatcgcc                                                                                                                                                                                                           <  7:201784‑M2/73‑41 (MQ=255)
                                                                                                                                                                                                                                                                           gccggtgccggacggcccgccgccgatcaccaccatgatatcgccctgcacaatctcttcccgcttgatcgccttgatcgcctgcgcttccgagacaaacacccgcacccggccggtgtggtggtatacgccatcttcgcccaccaccgacgggtcgatcgccgtggccttgatcaccgaaccttccggagcgatgttgcccgtcgggaagcagaccgtcgaggtcagccctttcgcttttgccttctccggcggcaggatcacgtcatccggc  >  2:287857‑M1/1‑1 (MQ=255)
                                                                                                                                                                                                                                                                           gccggtgccggacggcccgccgccgatcaccaccatgatatcgccctgcacaatctcttcccgcttgatcgccttgatcgcctgcgcttccgagacaaacacccgcacccggccggtgtggtggtatacgccatcttcgcccaccaccgacgggtcgatcgccgtggccttgatcaccgaaccttccggagcgatgttgcccgtcgggaagcagaccgtcgaggtcagccctttcgcttttgccttctccggcggcaggatcacgtcatccggc  >  2:244147‑M1/1‑1 (MQ=255)
                                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                                                 
GTGCCTGCGCGAGCAGGACGGCGTAGAGCCGGATGACGTGATCCTGCCGCCGGAGAAGGCAAAAGCGAAAGGGCTGACCTCGACGGTCTGCTTCCCGACGGGCAACATCGCTCCGGAAGGTTCGGTGATCAAGGCCACGGCGATCGACCCGTCGGTGGTGGGCGAAGATGGCGTATACCACCACACCGGCCGGGTGCGGGTGTTTGTCTCGGAAGCGCAGGCGATCAAGGCGATCAAGCGGGAAGAGATTGTGCAGGGCGATATCATGGTGGTGATCGGCGGCGGGCCGTCCGGCACCGGCATGGAAGAGACCTACCAGCTCACCTCCGCGCTAAAGCATATCTCGTGGGGCAAGACGGTGTCGCTCATCACCGATGCGCGCTTCTCGGGCGTGTCGACGGGCGCCTGCTTCGGCCACGTGTCGCCGGAGGCGCTGGCGGGCGGGCCGATTGGCAAGCTGCGCGATAACGACATCATCGAGATTGCCGTGGATCGTCTGACGTTAACTGGCAGCGTGAACTTCATCGGCACCGCGGACAAC  >  NC_000913/284424‑284964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.