| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 39288 | 81 (0.870) | 6 (0.070) | 5/186 | NT | 6.9% | coding (1099/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding |
| ? | NC_000913 | = 39296 | 87 (1.000) | coding (1091/1143 nt) | caiA | crotonobetaine reductase subunit II, FAD‑binding | |||||
CGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/39168‑39288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatctgACGAAATGCAGATCCTGACGCTGGGTCGTGCGGTGCTGAAGCAATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGT < NC_000913/39296‑39211 CGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGA < 1:382370/117‑1CGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGA > 2:382370/1‑117 ACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTG > 1:1045000/1‑106 ACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTG < 2:1045000/106‑1 TCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTG > 1:896931/1‑102 TCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTG < 2:896931/102‑1 CCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGACGAAATGCAGATC > 4:1064124/1‑108 CCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGACGAAATGCAGATC < 3:1064124/108‑1 TCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGA > 1:690559/1‑69 TCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTCCTTCAGCACCGCACGACCCAGCGTCAGta < 2:690559/69‑3 CATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGACGAAATGCAGATCCTG > 4:789936/1‑81 CATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGACGAAATGCAGATCCTG < 3:789936/81‑1 TCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGAT > 4:805009/1‑59 TCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGAT < 3:805009/59‑1 ACGACCCAGCGTCAGGATCTGACGAAATGCAGATC < 2:236623/35‑1 ACGACCCAGCGTCAGGATCTGACGAAATGCAGATC > 1:236623/1‑35 GACGAAATGCAGATCCTGACGCTGGGTCGTGCGGTGCTGAAGCAATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGT > 2:940381/1‑87 GACGAAATGCAGATCCTGACGCTGGGTCGTGCGGTGCTGAAGCAATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGT < 1:940381/87‑1 GACGAAATGCAGATCCTGACGCTGGGTCGTGCGGTGCTGAAGCAAT < 2:166317/46‑1 GACGAAATGCAGATCCTGACGCTGGGTCGTGCGGTGCTGAAGCAAT > 1:166317/1‑46 CGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/39168‑39288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatctgACGAAATGCAGATCCTGACGCTGGGTCGTGCGGTGCTGAAGCAATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGT < NC_000913/39296‑39211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |