New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3928881 (0.870)6 (0.070) 5/186 NT 6.9% coding (1099/1143 nt) caiA crotonobetaine reductase subunit II, FAD‑binding
?NC_000913 = 39296 87 (1.000)coding (1091/1143 nt) caiA crotonobetaine reductase subunit II, FAD‑binding

Only 100 of 119 total aligned reads displayed.

CGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCAGAAGTATT  >  NC_000913/39168‑39434
                                                                                                                        |                                                                                                                                                  
cGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGc                                                                                                                                                   <  1:828682/122‑1 (MQ=255)
cGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGc                                                                                                                                                   >  2:828682/1‑122 (MQ=255)
    ttATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCt                                                                                                                     >  1:763037/1‑148 (MQ=255)
               aCATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTG                                                                                                                                                    >  1:1045000‑M1/1‑106 (MQ=255)
               aCATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTG                                                                                                                                                    <  2:1045000‑M1/106‑1 (MQ=255)
                cATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGc                                                                                                               >  3:149851/1‑142 (MQ=255)
                cATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGc                                                                                                               <  4:149851/142‑1 (MQ=255)
                  ttCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACg                                                                                                       >  3:792250/1‑148 (MQ=255)
                   tCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTG                                                                                                                                                    <  2:896931‑M1/102‑1 (MQ=255)
                   tCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTG                                                                                                                                                    >  1:896931‑M1/1‑102 (MQ=255)
                          cccGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCgg                                                                                                                        >  3:583993/1‑123 (MQ=255)
                          cccGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCgg                                                                                                                        <  4:583993/123‑1 (MQ=255)
                          cccGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGc                                                                                               >  1:487043/1‑148 (MQ=255)
                           ccGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGacgaaatgcagatc                                                                                                                                      >  4:1064124‑M1/1‑94 (MQ=255)
                           ccGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCg                                                                                              <  2:763037/148‑1 (MQ=255)
                            cGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATcccc                                                                                                                                   >  3:151378/1‑110 (MQ=255)
                                    tGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCgg                                                                                             >  4:907107/1‑140 (MQ=255)
                                    tGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATACCCCGGAGACGCGGTCTACACGTAGATCACGCCAGAAGCgg                                                                                             <  3:907107/140‑1 (MQ=255)
                                     gATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACg                                                                                                       <  3:286113/129‑1 (MQ=255)
                                     gATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACg                                                                                                       >  4:286113/1‑129 (MQ=255)
                                      aTAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCa                                                                                                                                                  <  3:524359/85‑1 (MQ=255)
                                      aTAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCggt                                                                                   <  4:792250/148‑1 (MQ=255)
                                         aGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGa                                                                                                            <  2:918573/120‑1 (MQ=255)
                                         aGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTGAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGa                                                                                                            >  1:918573/1‑120 (MQ=255)
                                           aCGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTc                                                                                                                                           >  2:940381‑M2/1‑86 (MQ=255)
                                           aCGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTc                                                                                                                                           <  1:940381‑M2/87‑2 (MQ=255)
                                              cATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCg                                                                                                                                             >  3:1111508/1‑82 (MQ=255)
                                              cATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCg                                                                                                                                             <  4:1111508/82‑1 (MQ=255)
                                              cATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGccc                                                                           >  2:533058/1‑148 (MQ=255)
                                              cATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGccc                                                                           >  2:447699/1‑148 (MQ=255)
                                                tCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATcccc                                                                                                                                   >  1:590549/1‑90 (MQ=255)
                                                tCAGCGTCGCAACAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGc                                                                         >  3:80239/1‑148 (MQ=255)
                                                   gCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCgg                                                                                                                                <  1:428987/90‑1 (MQ=255)
                                                   gCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCgg                                                                                                                                >  2:428987/1‑90 (MQ=255)
                                                      tCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATccc                                                                   <  2:487043/148‑1 (MQ=255)
                                                        gCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGa                                                                 >  4:1102824/1‑148 (MQ=255)
                                                         cATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGacgaaatgcagatcctg                                                                                                                                   <  3:789936‑M1/81‑18 (MQ=255)
                                                         cATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGacgaaatgcagatcctg                                                                                                                                   >  4:789936‑M1/1‑64 (MQ=255)
                                                         cATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGac                                                                <  1:533058/148‑1 (MQ=255)
                                                         cATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGac                                                                <  1:447699/148‑1 (MQ=255)
                                                          aTCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCgg                                                                                             >  2:56588/1‑118 (MQ=255)
                                                          aTCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCgg                                                                                             <  1:56588/118‑1 (MQ=255)
                                                                cAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATcc                                                                    >  2:796540/1‑137 (MQ=255)
                                                                cAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATcc                                                                    <  1:796540/137‑1 (MQ=255)
                                                                      aCGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCAcc                                                   >  3:362873/1‑148 (MQ=255)
                                                                       cGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCa                                                                                                         >  3:971808/1‑93 (MQ=255)
                                                                       cGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCt                                                  >  4:1134534/1‑148 (MQ=255)
                                                                         gACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGc                                                <  3:1134534/148‑1 (MQ=255)
                                                                             tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAAt                                                                      <  1:927563/122‑1 (MQ=255)
                                                                             tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAAt                                                                      >  2:927563/1‑122 (MQ=255)
                                                                             tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCt                                                  >  1:1008785/1‑142 (MQ=255)
                                                                             tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTg                                            <  4:801973/148‑1 (MQ=255)
                                                                             tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTg                                            >  4:552229/1‑148 (MQ=255)
                                                                             tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTg                                            <  3:552229/148‑1 (MQ=255)
                                                                                 ggTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCg                                                                                              <  2:1125917/94‑1 (MQ=255)
                                                                                 ggTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCg                                                                                              >  1:1125917/1‑94 (MQ=255)
                                                                                   tATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACg                                                                                                       <  4:373769/83‑1 (MQ=255)
                                                                                   tATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGATGc                                                                                               >  2:806927/1‑91 (MQ=255)
                                                                                   tATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGc                                                                                               <  1:806927/91‑1 (MQ=255)
                                                                                    aTTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTc                                                                                                                                           >  1:166317‑M2/1‑45 (MQ=255)
                                                                                    aTTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTc                                                                                                                                           <  2:166317‑M2/46‑2 (MQ=255)
                                                                                        ctgcaccACCGCACGACCCAGCGTCAGGATCTCCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGAGCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCcaca                                 <  4:237586/142‑1 (MQ=255)
                                                                                         ttCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCg                                                                                     >  2:436065/1‑95 (MQ=255)
                                                                                         ttCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCg                                                                                     <  1:436065/95‑1 (MQ=255)
                                                                                         ttCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACaa                                >  3:237586/1‑148 (MQ=255)
                                                                                          tCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGc                                                                                                               <  2:573198/68‑1 (MQ=255)
                                                                                          tCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGc                                                                                                               >  1:573198/1‑68 (MQ=255)
                                                                                          tCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCa                                                                                                         <  3:1092034/74‑1 (MQ=255)
                                                                                          tCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGc                                                                                            <  2:585341/87‑1 (MQ=255)
                                                                                          tCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAAc                               >  2:532229/1‑148 (MQ=255)
                                                                                                ccGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCcaca                                 >  1:999647/1‑140 (MQ=255)
                                                                                                ccGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCcaca                                 <  2:999647/140‑1 (MQ=255)
                                                                                                  gCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATg                       <  1:532229/148‑1 (MQ=255)
                                                                                                   cACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGcc                                                                            <  4:607684/94‑1 (MQ=255)
                                                                                                    aCGACCCAGCGTCAGGATCTGacgaaatgcagatc                                                                                                                                      >  1:236623‑M1/1‑21 (MQ=255)
                                                                                                    aCGACCCAGCGTCAGGATCTGacgaaatgcagatc                                                                                                                                      <  2:236623‑M1/35‑15 (MQ=255)
                                                                                                       aCCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCa                  <  4:362873/148‑1 (MQ=255)
                                                                                                        cccAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCAt                 <  3:1102824/148‑1 (MQ=255)
                                                                                                           aGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGccc                                                         >  3:399731/1‑105 (MQ=255)
                                                                                                           aGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGccc                                                         <  4:399731/105‑1 (MQ=255)
                                                                                                               tCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCa          >  1:376195/1‑148 (MQ=255)
                                                                                                                cAGGATCTGCATTTCGTcagatcctgacgctgggtcgtgcggtgctgaagcaataccgctaagtccgtgcgctgcctgatg                                                                            <  3:789936‑M2/81‑65 (MQ=255)
                                                                                                                cAGGATCTGCATTTCGTcagatcctgacgctgggtcgtgcggtgctgaagcaataccgctaagtccgtgcgctgcctgatg                                                                            >  4:789936‑M2/1‑17 (MQ=255)
                                                                                                                 aGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCAGa        <  2:376195/148‑1 (MQ=255)
                                                                                                                  ggATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCAGaa       >  4:12376/1‑148 (MQ=255)
                                                                                                                   gATCTGCATTTCGTcagatcctgacgctgggtcgtgcggtgctgaagcaataccgctaagtccgtgcgctgcctgatgcgacgctgatgcgtcttatcaggcctacgg                                              <  3:1064124‑M2/108‑95 (MQ=255)
                                                                                                                   gATCTGCATTTCGTcagatcctgacgctgggtcgtgcggtgctgaagcaataccgctaagtccgtgcgctgcctgatgcgacgctgatgcgtcttatcaggcctacgg                                              >  4:1064124‑M2/1‑14 (MQ=255)
                                                                                                                    aTCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCggt                                                                                   <  1:335803/70‑1 (MQ=255)
                                                                                                                    aTCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCgg                                                                                    >  3:642018/1‑69 (MQ=255)
                                                                                                                    aTCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCgg                                                                                    <  4:642018/69‑1 (MQ=255)
                                                                                                                    aTCTGCAGTTCGGCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCggt                                                                                   >  2:335803/1‑70 (MQ=255)
                                                                                                                     tCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGc                      <  3:58152/130‑1 (MQ=255)
                                                                                                                     tCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGc                      >  4:58152/1‑130 (MQ=255)
                                                                                                                       tGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCAGAAGTAtt  <  3:745061/148‑1 (MQ=255)
                                                                                                                        gacgaaatgcagatcctgacgctgggtcgtgcggtgctgaagcaataccgctaagtccgtgcgctgcctgatgcgacgctgatgcgt                                                              <  1:940381‑M1/87‑87 (MQ=255)
                                                                                                                        gacgaaatgcagatcctgacgctgggtcgtgcggtgctgaagcaataccgctaagtccgtgcgctgcctgatgcgacgctgatgcgt                                                              >  2:940381‑M1/1‑1 (MQ=255)
                                                                                                                        gacgaaatgcagatcctgacgctgggtcgtgcggtgctgaagcaat                                                                                                       <  2:166317‑M1/46‑46 (MQ=255)
                                                                                                                        gacgaaatgcagatcctgacgctgggtcgtgcggtgctgaagcaat                                                                                                       >  1:166317‑M1/1‑1 (MQ=255)
                                                                                                                        gCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCAtt                                             <  3:146602/104‑1 (MQ=255)
                                                                                                                        gCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCAtt                                             >  4:146602/1‑104 (MQ=255)
                                                                                                                        |                                                                                                                                                  
CGCTTTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCAGAAGTATT  >  NC_000913/39168‑39434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.