New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3928881 (0.870)6 (0.070) 5/186 NT 6.9% coding (1099/1143 nt) caiA crotonobetaine reductase subunit II, FAD‑binding
?NC_000913 = 39296 87 (1.000)coding (1091/1143 nt) caiA crotonobetaine reductase subunit II, FAD‑binding

Only 100 of 107 total aligned reads displayed.

TTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCAGAAGTATT  >  NC_000913/39172‑39434
                                                                                                                            |                                                                                                                                          
ttATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCt                                                                                                                     >  1:763037/1‑148 (MQ=255)
            cATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGc                                                                                                               >  3:149851/1‑142 (MQ=255)
            cATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGc                                                                                                               <  4:149851/142‑1 (MQ=255)
              ttCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACg                                                                                                       >  3:792250/1‑148 (MQ=255)
                      cccGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCgg                                                                                                                        >  3:583993/1‑123 (MQ=255)
                      cccGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCgg                                                                                                                        <  4:583993/123‑1 (MQ=255)
                      cccGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGc                                                                                               >  1:487043/1‑148 (MQ=255)
                       ccGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCg                                                                                              <  2:763037/148‑1 (MQ=255)
                        cGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATcccc                                                                                                                                   <  4:151378/110‑1 (MQ=255)
                        cGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATcccc                                                                                                                                   >  3:151378/1‑110 (MQ=255)
                                tGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCgg                                                                                             >  4:907107/1‑140 (MQ=255)
                                tGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATACCCCGGAGACGCGGTCTACACGTAGATCACGCCAGAAGCgg                                                                                             <  3:907107/140‑1 (MQ=255)
                                 gATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACg                                                                                                       >  4:286113/1‑129 (MQ=255)
                                 gATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACg                                                                                                       <  3:286113/129‑1 (MQ=255)
                                  aTAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCggt                                                                                   <  4:792250/148‑1 (MQ=255)
                                     aGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGa                                                                                                            <  2:918573/120‑1 (MQ=255)
                                     aGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTGAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGa                                                                                                            >  1:918573/1‑120 (MQ=255)
                                       aCGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTc                                                                                                                                           <  1:940381‑M2/87‑2 (MQ=255)
                                       aCGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTc                                                                                                                                           >  2:940381‑M2/1‑86 (MQ=255)
                                          cATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGccc                                                                           >  2:533058/1‑148 (MQ=255)
                                          cATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGccc                                                                           >  2:447699/1‑148 (MQ=255)
                                            tCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATcccc                                                                                                                                   <  2:590549/90‑1 (MQ=255)
                                            tCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATcccc                                                                                                                                   >  1:590549/1‑90 (MQ=255)
                                             cAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCa                                                                        >  3:801973/1‑148 (MQ=255)
                                               gCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCgg                                                                                                                                <  1:428987/90‑1 (MQ=255)
                                               gCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCgg                                                                                                                                >  2:428987/1‑90 (MQ=255)
                                                  tCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATccc                                                                   <  2:487043/148‑1 (MQ=255)
                                                    gCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGa                                                                 >  4:1102824/1‑148 (MQ=255)
                                                     cATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGac                                                                <  1:533058/148‑1 (MQ=255)
                                                     cATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGac                                                                <  1:447699/148‑1 (MQ=255)
                                                      aTCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCgg                                                                                             <  1:56588/118‑1 (MQ=255)
                                                      aTCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCgg                                                                                             >  2:56588/1‑118 (MQ=255)
                                                            cAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATcc                                                                    <  1:796540/137‑1 (MQ=255)
                                                            cAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATcc                                                                    >  2:796540/1‑137 (MQ=255)
                                                                  aCGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTg                                                                                          >  1:899850/1‑109 (MQ=255)
                                                                  aCGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTg                                                                                          <  2:899850/109‑1 (MQ=255)
                                                                  aCGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCAcc                                                   >  3:362873/1‑148 (MQ=255)
                                                                   cGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCa                                                                                                         >  3:971808/1‑93 (MQ=255)
                                                                   cGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCt                                                  >  4:1134534/1‑148 (MQ=255)
                                                                     gACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGc                                                <  3:1134534/148‑1 (MQ=255)
                                                                         tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAAt                                                                      >  2:927563/1‑122 (MQ=255)
                                                                         tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAAt                                                                      <  1:927563/122‑1 (MQ=255)
                                                                         tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCt                                                  <  2:1008785/142‑1 (MQ=255)
                                                                         tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCt                                                  >  1:1008785/1‑142 (MQ=255)
                                                                         tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTg                                            <  4:801973/148‑1 (MQ=255)
                                                                         tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTg                                            >  4:552229/1‑148 (MQ=255)
                                                                         tAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTg                                            <  3:552229/148‑1 (MQ=255)
                                                                             ggTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCg                                                                                              >  1:1125917/1‑94 (MQ=255)
                                                                             ggTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCg                                                                                              <  2:1125917/94‑1 (MQ=255)
                                                                               tATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACg                                                                                                       <  4:373769/83‑1 (MQ=255)
                                                                               tATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACg                                                                                                       >  3:373769/1‑83 (MQ=255)
                                                                               tATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGc                                                                                               <  1:806927/91‑1 (MQ=255)
                                                                                aTTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTc                                                                                                                                           <  2:166317‑M2/46‑2 (MQ=255)
                                                                                aTTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTc                                                                                                                                           >  1:166317‑M2/1‑45 (MQ=255)
                                                                                  tGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCca                                   >  4:745061/1‑148 (MQ=255)
                                                                                    ctgcaccACCGCACGACCCAGCGTCAGGATCTCCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGAGCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCcaca                                 <  4:237586/142‑1 (MQ=255)
                                                                                     ttCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCg                                                                                     >  2:436065/1‑95 (MQ=255)
                                                                                     ttCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCg                                                                                     <  1:436065/95‑1 (MQ=255)
                                                                                      tCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGc                                                                                                               <  2:573198/68‑1 (MQ=255)
                                                                                      tCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGc                                                                                                               >  1:573198/1‑68 (MQ=255)
                                                                                      tCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCa                                                                                                         >  4:1092034/1‑74 (MQ=255)
                                                                                      tCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCa                                                                                                         <  3:1092034/74‑1 (MQ=255)
                                                                                      tCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGc                                                                                            <  2:585341/87‑1 (MQ=255)
                                                                                      tCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAAc                               >  2:532229/1‑148 (MQ=255)
                                                                                            ccGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCcaca                                 >  1:999647/1‑140 (MQ=255)
                                                                                            ccGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCcaca                                 <  2:999647/140‑1 (MQ=255)
                                                                                              gCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATg                       <  1:532229/148‑1 (MQ=255)
                                                                                               cACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGcc                                                                            <  4:607684/94‑1 (MQ=255)
                                                                                               cACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGcc                                                                            >  3:607684/1‑94 (MQ=255)
                                                                                                    cccAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCAt                 <  3:1102824/148‑1 (MQ=255)
                                                                                                       aGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGccc                                                         >  3:399731/1‑105 (MQ=255)
                                                                                                       aGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGccc                                                         <  4:399731/105‑1 (MQ=255)
                                                                                                           tCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCa          >  1:376195/1‑148 (MQ=255)
                                                                                                            cAGGATCTGCATTTCGTcagatcctgacgctgggtcgtgcggtgctgaagcaataccgctaagtccgtgcgctgcctgatg                                                                            <  3:789936‑M2/81‑65 (MQ=255)
                                                                                                            cAGGATCTGCATTTCGTcagatcctgacgctgggtcgtgcggtgctgaagcaataccgctaagtccgtgcgctgcctgatg                                                                            >  4:789936‑M2/1‑17 (MQ=255)
                                                                                                             aGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCAGa        <  2:376195/148‑1 (MQ=255)
                                                                                                              ggATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCAGaa       >  4:12376/1‑148 (MQ=255)
                                                                                                               gATCTGCATTTCGTcagatcctgacgctgggtcgtgcggtgctgaagcaataccgctaagtccgtgcgctgcctgatgcgacgctgatgcgtcttatcaggcctacgg                                              <  3:1064124‑M2/108‑95 (MQ=255)
                                                                                                               gATCTGCATTTCGTcagatcctgacgctgggtcgtgcggtgctgaagcaataccgctaagtccgtgcgctgcctgatgcgacgctgatgcgtcttatcaggcctacgg                                              >  4:1064124‑M2/1‑14 (MQ=255)
                                                                                                               gATCTGCATTTCGTcagatcctgacgctgggtcgt                                                                                                                       >  1:236623‑M2/1‑14 (MQ=255)
                                                                                                               gATCTGCATTTCGTcagatcctgacgctgggtcgt                                                                                                                       <  2:236623‑M2/35‑22 (MQ=255)
                                                                                                                aTCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCggt                                                                                   <  1:335803/70‑1 (MQ=255)
                                                                                                                aTCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCgg                                                                                    >  3:642018/1‑69 (MQ=255)
                                                                                                                aTCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCgg                                                                                    <  4:642018/69‑1 (MQ=255)
                                                                                                                 tCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGc                      >  4:58152/1‑130 (MQ=255)
                                                                                                                 tCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGc                      <  3:58152/130‑1 (MQ=255)
                                                                                                                  cTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCAGAAGTAt   <  3:12376/148‑1 (MQ=255)
                                                                                                                   tGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCAGAAGTAtt  <  3:745061/148‑1 (MQ=255)
                                                                                                                    gCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCAtt                                             <  3:146602/104‑1 (MQ=255)
                                                                                                                    gCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCAtt                                             >  4:146602/1‑104 (MQ=255)
                                                                                                                     cgtttCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGa                                                                                                  <  3:375696/48‑1 (MQ=255)
                                                                                                                     cgtttCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGa                                                                                                  >  4:375696/3‑50 (MQ=255)
                                                                                                                     cATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCggtg                                                                                  >  3:941268/1‑66 (MQ=255)
                                                                                                                     cATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCggtg                                                                                  <  4:941268/66‑1 (MQ=255)
                                                                                                                     cATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCAcc                                                   <  2:526316/97‑1 (MQ=255)
                                                                                                                     cATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCAcc                                                   >  1:526316/1‑97 (MQ=255)
                                                                                                                        ttCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTACCCGCAATCCCGACACCGCCCAGCACCTGCAt                                              >  1:97071/1‑99 (MQ=255)
                                                                                                                        ttCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTACCCGCAATCCCGACACCGCCCAGCACCTGCAt                                              <  2:97071/99‑1 (MQ=255)
                                                                                                                            tCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCAcc                                                   >  4:12097/1‑90 (MQ=255)
                                                                                                                            tCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCAcc                                                   <  3:12097/90‑1 (MQ=255)
                                                                                                                            |                                                                                                                                          
TTATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGCGGTATTGCTTCAGCACCGCACGACCCAGCGTCAGGATCTGCATTTCGTCAGATCCCCCGGAGACGCGGTCTACACGCAGATCACGCCAGAAGCGGCTGATGCGGTGGTTGCCCGCAATCCCGACACCGCCCAGCACCTGCATTGCGCTATCCACAACTTCAAATGCCGCATTGGCGCAGAAGTATT  >  NC_000913/39172‑39434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.