| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 66642 | 14 (0.150) | 12 (0.140) | 7/186 | NT | 57.1% | noncoding (78/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 2304729 = | 5 (0.060) | noncoding (313/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
GTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/66563‑66642‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGT > NC_000913/2304729‑2304808 GTGCCGTATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG < 4:935517/78‑1GTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAG > 3:935517/1‑78 TTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCA > 3:693076/1‑63 TTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCA < 4:693076/63‑1 CTGATAAGACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGG < 1:1111835/72‑1 CTGATAAGACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGG > 2:1111835/1‑72 CTGATAAGACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATA > 2:322631/1‑69 CTGATAAGACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATA < 1:322631/69‑1 ATAAGACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGT > 3:359513/1‑107 ATAAGACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGT < 4:359513/107‑1 TAAGACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAA > 3:587065/1‑93 TAAGACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAA < 4:587065/93‑1 TAAGACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCC > 2:182357/1‑53 TAAGACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCC < 1:182357/53‑1 GACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGG < 3:804039/59‑1 GACGCGCCAGCGTCGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGG > 4:804039/1‑59 CAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGta > 3:193607/1‑49 CAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGta < 4:193607/51‑3 GTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/66563‑66642‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGT > NC_000913/2304729‑2304808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |