New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 66642	14 (0.150)	12 (0.140)	7/186	NT	57.1%	noncoding (78/248 nt)	REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913	2304729 =	5 (0.060)					noncoding (313/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

ACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGT  >  NC_000913/2304675‑2304831                                                       |                                                                                                       aCATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACg           <  3:1048139/148‑1 (MQ=39)                         ctgataagacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATa                                                                  <  1:322631‑M2/39‑1 (MQ=255)                         ctgataagacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATa                                                                  >  2:322631‑M2/31‑69 (MQ=255)                         ctgataagacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAgg                                                               <  1:1111835‑M2/42‑1 (MQ=255)                         ctgataagacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAgg                                                               >  2:1111835‑M2/31‑72 (MQ=255)                            ataagacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGt                         <  4:359513‑M2/80‑1 (MQ=255)                            ataagacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGt                         >  3:359513‑M2/28‑107 (MQ=255)                             taagacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCAcccc                                                                              <  1:182357‑M2/27‑1 (MQ=255)                             taagacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCAcccc                                                                              >  2:182357‑M2/27‑53 (MQ=255)                             taagacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCaa                                      >  3:587065‑M2/27‑93 (MQ=255)                             taagacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCaa                                      <  4:587065‑M2/67‑1 (MQ=255)                                gacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTgg                                                                     <  3:804039‑M2/36‑1 (MQ=255)                                gacgcgccagcgtcgcatcaggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTgg                                                                     >  4:804039‑M2/24‑59 (MQ=255)                                          cgTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTg                   >  2:27506/1‑99 (MQ=255)                                          cgTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTg                   <  1:27506/99‑1 (MQ=255)                                          cgTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt  <  3:144013/116‑1 (MQ=39)                                          cgTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt  >  4:144013/1‑116 (MQ=255)                                            tCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt  >  2:83122/1‑114 (MQ=40)                                            tCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt  <  1:83122/114‑1 (MQ=40)                                             cTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGcc                            <  3:1028536/87‑1 (MQ=255)                                             cTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGcc                            >  4:1028536/1‑87 (MQ=255)                                                  caggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGgcgta                                                           >  3:193607‑M2/6‑49 (MQ=255)                                                  caggcCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGgcgta                                                           <  4:193607‑M2/46‑3 (MQ=255)                                                       |                                                                                                       ACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGT  >  NC_000913/2304675‑2304831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.