| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 66642 | 14 (0.150) | 12 (0.140) | 7/186 | NT | 57.1% | noncoding (78/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 2304729 = | 5 (0.060) | noncoding (313/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
CTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTG > NC_000913/66517‑66749 | cTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGAt > 4:1009789/1‑140 (MQ=255)cTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGAt < 3:1009789/140‑1 (MQ=255) aaCATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCttt > 1:629226/1‑118 (MQ=255) aaCATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCttt < 2:629226/118‑1 (MQ=255) tGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATcc > 1:603890/1‑119 (MQ=255) tGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATcc < 2:603890/119‑1 (MQ=255) cTTTGCTTATCCGGCCTACAAAATAGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTg < 1:54861/90‑1 (MQ=18) cTTTGCTTATCCGGCCTACAAAATAGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTg > 2:54861/1‑90 (MQ=18) cTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGc > 3:800209/1‑148 (MQ=255) aGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTg < 4:800209/148‑1 (MQ=255) gCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGc < 1:1049967/84‑1 (MQ=35) gCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGc > 2:1049967/1‑84 (MQ=33) cTGATAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggtcggataagg < 1:1111835‑M1/72‑43 (MQ=255) cTGATAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggtcggataagg > 2:1111835‑M1/1‑30 (MQ=255) cTGATAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggtcggata > 2:322631‑M1/1‑30 (MQ=255) cTGATAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggtcggata < 1:322631‑M1/69‑40 (MQ=255) aTAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcggttacgccgcatccgacatccaacgtccgagccggt > 3:359513‑M1/1‑27 (MQ=255) aTAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcggttacgccgcatccgacatccaacgtccgagccggt < 4:359513‑M1/107‑81 (MQ=255) tAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcggttacgccgcatccgacatccaa > 3:587065‑M1/1‑26 (MQ=255) tAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcggttacgccgcatccgacatccaa < 4:587065‑M1/93‑68 (MQ=255) tAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccacccc > 2:182357‑M1/1‑26 (MQ=255) tAAGACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccacccc < 1:182357‑M1/53‑28 (MQ=255) gACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggttgg < 3:804039‑M1/59‑37 (MQ=255) gACGCGCCAGCGTCGCATCAGGCctacaccgctgtgaagtgctccaccccgtaggttgg > 4:804039‑M1/1‑23 (MQ=255) aCGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGcc > 3:157515/1‑78 (MQ=34) aCGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGcc < 4:157515/78‑1 (MQ=34) cAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcgta > 3:193607‑M1/1‑5 (MQ=255) cAGGCctacaccgctgtgaagtgctccaccccgtaggttggataaggcgta < 4:193607‑M1/51‑47 (MQ=255) | CTTCTAATACCTGGCGTTTGAGATCTTCTAACATGTTGACTCCTTCGTGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGCGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTG > NC_000913/66517‑66749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |