New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 668251	83 (0.890)	8 (0.090)	7/182	NT	9.1%	coding (465/468 nt)	rlmH	23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent
	?	NC_000913	= 668256	84 (0.990)					coding (460/468 nt)	rlmH	23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent

ACAGGTTGGCGATAAGCACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/668100‑668251 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttatcacCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGATTTTGCTGCTGACCGGCGTGCTT  <  NC_000913/668256‑668113                                                                                                                                                                                                                                                                                                          ACAGGTTGGCGATAAGCACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTA                                                                                                                                                      <  2:436855/148‑1  CAGGTTGGCGATAAGCACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTAT                                                                                                                                                     <  2:956061/148‑1  CAGGTTGGCGATAAGCACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTAT                                                                                                                                                     >  1:956061/1‑148                     CCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATC                                                                                                                                                    <  1:1004118/130‑1                     CCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATC                                                                                                                                                    >  2:1004118/1‑130                                         CAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATA                                                                                                                                       >  3:672901/1‑123                                         CAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATA                                                                                                                                       <  4:672901/123‑1                                         CAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCC                                                                                                                                                          <  2:362211/104‑1                                         CAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCC                                                                                                                                                          >  1:362211/1‑104                                          AAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTAT                                                                                                                                                     >  1:507953/1‑108                                          AAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTAT                                                                                                                                                     <  2:507953/108‑1                                                               CGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCA                                                                                                                                                   <  4:673999/89‑1                                                               CGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCA                                                                                                                                                   >  3:673999/1‑89                                                                        AGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATAA                                                                                                                                      <  2:431855/93‑1                                                                        AGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATAA                                                                                                                                      >  1:431855/1‑93                                                                                                                  TTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATAAG                                                                                                                                     >  4:476946/1‑52                                                                                                                  TTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATAAG                                                                                                                                     <  3:476946/52‑1                                                                                                                       CCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATAA                                                                                                                                      >  4:247280/1‑46                                                                                                                       CCGCTGCGTTTTCTACTCAAAGCTCCCTTATCACCGTGAGTGATAA                                                                                                                                      <  3:247280/46‑1                                                                                                                                                CCTTATCACCGTGAGTGATAAGGGAGTTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTT                               <  2:925772/124‑1                                                                                                                                                CCTTATCACCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGG                            >  1:824267/1‑127                                                                                                                                                CCTTATCACCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGG                            <  2:824267/127‑1                                                                                                                                                CCTTATCACCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTT                               >  1:925772/1‑124                                                                                                                                                CCTTATCACCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCG                                                >  1:350724/1‑107                                                                                                                                                CCTTATCACCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCG                                                <  2:350724/107‑1                                                                                                                                                     TCACCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGATTTTGCTGCTGACCGGCGTGCTT  <  3:1013191/148‑1                                                                                                                                                      CACCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTG                                                           <  2:801207/90‑1                                                                                                                                                      CACCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGACCGCGCTG                                                           >  1:801207/1‑90                                                                                                                                                        CCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGATTTTGCTGCTGACCGGCGTG     <  3:1032969/142‑1                                                                                                                                                        CCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGATTTTGCTGCTGACCGGCGTG     >  4:1032969/1‑142                                                                                                                                                        CCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGATT                       >  2:509758/1‑124                                                                                                                                                        CCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGATT                       <  1:509758/124‑1                                                                                                                                                                                                                                                                                                          ACAGGTTGGCGATAAGCACGCCGGTCAGCAGCAAAATCCCCAAAAAGGCGACCAGCGCCCGGCGCACAAACAGCGCGGACTCTGCCGTATAGTCGCGAAAAGAGTTCTGTAGTTTCATCCGCTGCGTTTTCTACTCAAAGCTCCCTTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/668100‑668251 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttatcacCGTGAGTGATAAGGGAGCTTTGAGTAGAAAACGCAGCGGATGAAACTACAGAACTCTTTTCGCGACTATACGGCAGAGTCCGCGCTGTTTGTGCGCCGGGCGCTGGTCGCCTTTTTGGGGATTTTGCTGCTGACCGGCGTGCTT  <  NC_000913/668256‑668113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.