New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2642131 =	46 (0.490)	6 (0.070)	6/186	NT	14.2%	coding (714/1014 nt)	rodZ	MreB assembly cytoskeletal protein
	?	NC_000913	2642169 =	30 (0.350)					coding (676/1014 nt)	rodZ	MreB assembly cytoskeletal protein

TAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCGGTAGTATCCACAGACGCTGGCGGCGTGGA  >  NC_000913/2642034‑2642313                                                                                                                                        |                                                                                                                                                 tAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTcgc                                                                                                                                      >  3:786137/1‑148 (MQ=255)    cATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCgg                                                                                                                                            <  2:577294/139‑1 (MQ=255)    cATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCgg                                                                                                                                            >  1:577294/1‑139 (MQ=255)                ccagccagCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCa                                                                                                                            >  3:991712/1‑143 (MQ=255)                ccagccagCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCa                                                                                                                            <  4:991712/143‑1 (MQ=255)                          aTCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGaa                                                                                                             <  4:321843/148‑1 (MQ=255)                               cAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACa                                                                                                                         >  3:743088/1‑131 (MQ=255)                               cAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACa                                                                                                                         <  4:743088/131‑1 (MQ=255)                                   aaaGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTgg                                                                                                                                                  <  4:255329/102‑1 (MQ=255)                                   aaaGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTgg                                                                                                                                                  >  3:255329/1‑102 (MQ=255)                                          atcaCCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCAt                                                                                             >  3:26811/1‑148 (MQ=255)                                           tcaCCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCg                                                                                                                                             >  1:1105200/1‑99 (MQ=255)                                           tcaCCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCg                                                                                                                                             <  2:1105200/99‑1 (MQ=255)                                                    cATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCgg                                                                                   <  4:786137/148‑1 (MQ=255)                                                      ttCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAAcc                                                                                                 >  1:1015900/1‑132 (MQ=255)                                                      ttCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCAAAGGCGAAACAAcc                                                                                                 <  2:1015900/132‑1 (MQ=255)                                                                                 ccAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGc                                                                                               >  4:335946/1‑107 (MQ=255)                                                                                 ccAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGc                                                                                               <  3:335946/107‑1 (MQ=255)                                                                                             gTTGGCGACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCg                                          >  2:618211/1‑148 (MQ=255)                                                                                                  caacggcagcaacaacgccagatggtgctgcgccgttgGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGa                                                                                  <  1:282097‑M2/65‑1 (MQ=255)                                                                                                  caacggcagcaacaacgccagatggtgctgcgccgttgGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGa                                                                                  >  2:282097‑M2/39‑103 (MQ=255)                                                                                                   aacggcagcaacaacgccagatggtgctgcgccgttgGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAATAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTgttgg                                    >  4:684360‑M2/38‑148 (MQ=255)                                                                                                   AACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCAtt                                                                                            >  2:666335‑M1/1‑92 (MQ=255)                                                                                                   AACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCAtt                                                                                            <  1:666335‑M1/92‑1 (MQ=255)                                                                                                    ACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTgttggt                                   <  2:880509‑M1/148‑1 (MQ=255)                                                                                                    ACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTgttggt                                   <  2:843108‑M1/148‑1 (MQ=255)                                                                                                    ACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTgtt                                      >  1:1097509‑M1/1‑145 (MQ=255)                                                                                                    ACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTgtt                                      <  2:1097509‑M1/145‑1 (MQ=255)                                                                                                        ctgcaacaacgccagatggtgctgcgccgttgGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCg                               <  3:684360‑M2/116‑1 (MQ=255)                                                                                                        CGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCg                               >  1:843108‑M1/1‑148 (MQ=255)                                                                                                            gcaacaacgccagatggtgctgccgttgGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCgtgt                                       >  1:308396‑M2/29‑136 (MQ=255)                                                                                                            gcaacaacgccagatggtgctgccgttgGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCgtgt                                       <  2:308396‑M2/108‑1 (MQ=255)                                                                                                             caCCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACgg                                                      <  2:695593/120‑1 (MQ=255)                                                                                                             caCCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACgg                                                      >  1:695593/1‑120 (MQ=255)                                                                                                             caCCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCGgtagt                          >  3:127170/1‑148 (MQ=255)                                                                                                             caCCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCGgtagt                          <  1:880509/148‑1 (MQ=255)                                                                                                               ccATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCGGTAGTAt                        <  1:618211/148‑1 (MQ=255)                                                                                                               ccATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCGGTAGTAt                        <  4:127170/148‑1 (MQ=255)                                                                                                                cATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTa                                                         >  1:475948/1‑114 (MQ=255)                                                                                                                cATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTa                                                         <  2:475948/114‑1 (MQ=255)                                                                                                                  tCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCGGTAGTATCca                     >  2:829503/1‑148 (MQ=255)                                                                                                                   cTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTg                                            >  4:783662/1‑124 (MQ=255)                                                                                                                   cTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTg                                            <  3:783662/124‑1 (MQ=255)                                                                                                                      gCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCGGTAGTATCCACAGa                 >  1:414618/1‑148 (MQ=255)                                                                                                                        gttgttGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCGGTAGTATCCACAGACg               <  1:829503/148‑1 (MQ=255)                                                                                                                             tgctgcCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGc                                                                          <  2:790858/84‑1 (MQ=255)                                                                                                                             tgctgcCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGc                                                                          >  1:790858/1‑84 (MQ=255)                                                                                                                               ctgcCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTa                                                         >  1:70859/1‑99 (MQ=255)                                                                                                                               ctgcCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTa                                                         <  2:70859/99‑1 (MQ=255)                                                                                                                                     ttgGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCGGTAGTATCCACAGACGCTGGCGGCGTGGa  <  2:414618‑M2/145‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                 TAGCATCAGTGACCTCCAGCCAGCAATCGGCAGTAAAGTTCATCACCAGCGCATTCGGATCAGCCACCGGCGTGGTCACGCCAGCCTGATCGGTTGGCAACGGCGCAGCACCATCTGGCGTTGTTGCTGCCGTTGGTGCCGGGGTCGCGGCGGTATCAACATTTGCCTGCGAAGGCGAAACAACCGCATTCTGTTGCGGATCAACAGCTGGTGCTGGCGCAGTTACGGCAGGTGTTTGCGTGTTGGTTGCGGTAGTATCCACAGACGCTGGCGGCGTGGA  >  NC_000913/2642034‑2642313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.