New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3738815 =213 (2.280)25 (0.290) 16/184 NT 11.9% coding (1319/2031 nt) malS alpha‑amylase
?NC_000913 3738835 = 174 (2.030)coding (1339/2031 nt) malS alpha‑amylase

Only 100 of 334 total aligned reads displayed.

GCTAGCCTTTTTGCCGGATATCAAAACCGAATCAACTACCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAAAAAAGCTAACCCCGACAAAGCATTAGATGAC  >  NC_000913/3738696‑3738981
                                                                                                                                           |                                                                                                                                                  
tttttccattcgcgaagcgcggcgctggcttcggttttcagttgctgccaggcgggcaactcaacatgtttggcggtatcgacccgaaaaccatcaatcccatagtcgcggacccacttACTTAACCCACTGGTTAAGTCAg                                                                                                                                                  <  4:666938‑M1/23‑1 (MQ=255)
     ccTTTTTGCCGGATATCAAAACCGAATCAACTACCGCTTCTGGTCTGCCCGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTc                                                                                                                                            >  4:135082/1‑143 (MQ=255)
       tttttGCCGGATATCAAAACCGAATCAACTACCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACt                                                                                                                                     <  3:1085674/148‑1 (MQ=255)
        ttttGCCGGATATCAAAACCGAATCAACTACCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTa                                                                                                                                    >  1:411145/1‑148 (MQ=255)
                                   cTACCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGa                                                                                                                           <  4:876032/130‑1 (MQ=255)
                                    tACCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAg                                                                                                                                                  <  2:133619/106‑1 (MQ=255)
                                         ttgctgccaggcgggcaactcaacatgtttggcggtatcgacccgaaaaccatcaatcccatagtcgcggacccactgACTTAACCCACTGGTTAAGTCAg                                                                                                                                                  >  2:636254‑M1/79‑101 (MQ=255)
                                          tgctgccaggcgggcaactcaacatgtttggcggtatcgacccgaaaaccatcaatcccatagtcgcggacccactgACTTAACCCACTGGTTAAGTc                                                                                                                                                    <  3:133646‑M1/21‑1 (MQ=255)
                                            cTGGTCTGCCGGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGt                                                                                                                                                 >  4:917833/1‑99 (MQ=255)
                                                 cTGCCGGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTAt                                                                                                                                   >  2:471009/1‑108 (MQ=255)
                                                 cTGCCGGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCggg                                                                                                                <  1:831152/127‑1 (MQ=255)
                                                   gCCGGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTAt                                                                                                                                   <  1:111144/106‑1 (MQ=255)
                                                    ccGGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGa                                                                                                                           <  3:906567/113‑1 (MQ=255)
                                                        tgtTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAg                                                                                                                                                  <  3:548149/86‑1 (MQ=255)
                                                           tCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTc                                                                                                                   <  3:318314/114‑1 (MQ=255)
                                                              ataAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCg                                                                                                             >  3:147673/1‑117 (MQ=255)
                                                              ataAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGa                                                                                          <  1:157913/136‑1 (MQ=255)
                                                              ataAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGcc                                                                                >  3:866897/1‑146 (MQ=255)
                                                                aaaaaCAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAg                                                                                                                                                  <  4:151862/78‑1 (MQ=255)
                                                                aaaaaCAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAg                                                                                                                                                  <  1:742388/78‑1 (MQ=255)
                                                                aaaaaCAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCcg                                                                                                                                          <  1:681224/86‑1 (MQ=255)
                                                                aaaaaCAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGc                                                                                     >  4:809788/1‑139 (MQ=255)
                                                                aaaaaCAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGgc                                                                            >  4:1066987/1‑148 (MQ=255)
                                                                   aaCAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGa                                                                                                                               <  3:688337/94‑1 (MQ=255)
                                                                      aaaaTGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGt                                                                                                               <  4:525894/107‑1 (MQ=255)
                                                                       aaaTGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCggg                                                                                                                <  1:1036899/105‑1 (MQ=255)
                                                                         aTGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGAt                                                                                                                          >  2:354795/1‑93 (MQ=255)
                                                                              tACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCaaa                                                                                                  >  3:931604/1‑112 (MQ=255)
                                                                                  cACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCggg                                                                                                                <  2:73142/94‑1 (MQ=255)
                                                                                  cACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCg                                                                                                             >  2:873813/1‑97 (MQ=255)
                                                                                  cACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCg                                                                                                             <  4:947491/97‑1 (MQ=255)
                                                                                  cACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATa                                                                                                          >  3:999888/1‑100 (MQ=255)
                                                                                  cACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCg                                                                                                       >  4:463396/1‑103 (MQ=255)
                                                                                  cACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGGCTGGCAGCAACTGaaaa                                                                <  4:762089/142‑1 (MQ=255)
                                                                                       cAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAgc                                                     >  2:536384/1‑148 (MQ=255)
                                                                                         aaGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATg                                                                                                                                  <  2:816021/69‑1 (MQ=255)
                                                                                          aGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCggg                                                                                                                >  4:686996/1‑86 (MQ=255)
                                                                                          aGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAAcc                                                              >  2:211882/1‑136 (MQ=255)
                                                                                          aGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGcgcc                                                  >  2:1095074/1‑148 (MQ=255)
                                                                                           gCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCaa                                                                       >  1:423476/1‑126 (MQ=255)
                                                                                              aTTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTg                                                                              <  2:1039424/116‑1 (MQ=255)
                                                                                                tGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCggg                                                                                                                <  4:39932/80‑1 (MQ=255)
                                                                                                   cGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCggg                                                                                                                >  4:323345/1‑77 (MQ=255)
                                                                                                     gCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACAt                                                                                               >  1:1003267/1‑92 (MQ=255)
                                                                                                     gCTATACGCCGCGCGACTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGt                                                                                             >  1:1074237/1‑94 (MQ=255)
                                                                                                      cTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGaa                                      <  3:1066987/148‑1 (MQ=255)
                                                                                                      cTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGaa                                      <  1:536384/148‑1 (MQ=255)
                                                                                                       tataCGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGt                                                                                             >  1:209681/1‑92 (MQ=255)
                                                                                                          aCGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGt                                                                                                               <  2:407853/71‑1 (MQ=255)
                                                                                                          aCGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTg                                                                              >  3:722628/1‑104 (MQ=255)
                                                                                                              cgcgcgATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGaaaaa                              <  1:233199/148‑1 (MQ=255)
                                                                                                               gcgcgATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGAt                                                                                                                          <  4:842358/55‑1 (MQ=255)
                                                                                                               gcgcgATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGa                                                                                          >  2:305490/1‑87 (MQ=255)
                                                                                                               gcgcgATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGt                                                                                        <  3:739675/89‑1 (MQ=255)
                                                                                                                  cgATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGa                                                            <  1:132410/114‑1 (MQ=255)
                                                                                                                    ctgacttaaccagtgggttaagtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCaa                                                                       <  1:636254‑M2/78‑1 (MQ=255)
                                                                                                                    ctgacttaaccagtgggttaagtAAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGaaaaa                              >  3:666938‑M2/24‑142 (MQ=255)
                                                                                                                    aTTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTgg                                                                             <  4:753148/95‑1 (MQ=255)
                                                                                                                    aTTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGa                                                            <  4:712794/112‑1 (MQ=255)
                                                                                                                    aTTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATg                                    <  2:413973/136‑1 (MQ=255)
                                                                                                                      tACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGa                                                            <  3:639369/110‑1 (MQ=255)
                                                                                                                       ACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCgg                                                                                                                 <  2:371989‑M1/56‑1 (MQ=255)
                                                                                                                        CTTAGCCCACTGGTTAAGTCAGTGGGTCCGCGACTATggg                                                                                                                                >  4:1079641‑M1/1‑40 (MQ=255)
                                                                                                                        CTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATggg                                                                                                                                <  3:1079641‑M1/40‑1 (MQ=255)
                                                                                                                          TAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTg                                                                              <  3:404604‑M1/88‑1 (MQ=255)
                                                                                                                          TAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGaaa                                                                 >  4:1143993‑M1/1‑101 (MQ=255)
                                                                                                                          TAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAgcg                                                    <  3:1028998‑M1/114‑1 (MQ=255)
                                                                                                                          TAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAATAAAGCTAACCCCGa                  <  4:234623‑M1/148‑1 (MQ=255)
                                                                                                                            accagtgggttaagtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTcg                                          >  4:361557‑M2/16‑122 (MQ=255)
                                                                                                                            accagtgggttaagtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTcg                                          <  3:361557‑M2/107‑1 (MQ=255)
                                                                                                                             CCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGcc                                                                                <  3:172086‑M1/83‑1 (MQ=255)
                                                                                                                             CCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCt                                             <  4:732992‑M1/118‑1 (MQ=255)
                                                                                                                              CCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGaaaaa                              <  2:161544‑M1/132‑1 (MQ=255)
                                                                                                                               cACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTg                                                                                           <  2:95798/70‑1 (MQ=255)
                                                                                                                               cACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGaa                                                           >  1:972106/1‑102 (MQ=255)
                                                                                                                               cACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGa                                                            >  1:617812/1‑101 (MQ=255)
                                                                                                                               cACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCcgcg                                               >  1:337465/1‑114 (MQ=255)
                                                                                                                               cACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAAAAAAGCTAACCCCg                   <  2:681003/142‑1 (MQ=255)
                                                                                                                               cACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAAAAAAGCTAACCCCGACAAAg             >  1:389922/1‑148 (MQ=255)
                                                                                                                               cACTGGGTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTcg                                          >  2:610655/1‑119 (MQ=255)
                                                                                                                                aCTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGa                                                            <  2:1018528/100‑1 (MQ=255)
                                                                                                                                aCTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGa                                       <  3:460532/121‑1 (MQ=255)
                                                                                                                                aCTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAAAAAAGCTAACCCCGACAAAGc            >  1:880602/1‑148 (MQ=255)
                                                                                                                                 cTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGc                                                         <  3:495093/102‑1 (MQ=255)
                                                                                                                                 cTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAAAAAAg                            <  3:779232/131‑1 (MQ=255)
                                                                                                                                 cTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAAAAAAGCTAACCCCGACAAAGc            <  1:36952/147‑1 (MQ=255)
                                                                                                                                   ggttaagtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGcc                                                                                <  2:245086‑M2/69‑1 (MQ=255)
                                                                                                                                     ttaagtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGcc                                                                                <  3:761549‑M2/69‑1 (MQ=255)
                                                                                                                                     ttaagtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGa                                                            <  2:90716‑M2/89‑1 (MQ=255)
                                                                                                                                     ttaagtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAAt                                     >  1:950917‑M2/7‑118 (MQ=255)
                                                                                                                                     ttaagtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAAAAAAGCTAACCCCGACAAAGCATTAg       <  4:55948‑M2/142‑1 (MQ=255)
                                                                                                                                        agtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAAAAAAGCTAACCCCGACAAAGCAtt         <  4:429876‑M2/140‑1 (MQ=255)
                                                                                                                                        agtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAAAAAAGCTAACCCCGACAAAGCAtt         >  3:429876‑M2/4‑143 (MQ=255)
                                                                                                                                        agtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAAAAAAGCTAACCCCGACAAAGCATTAGATg    <  3:399118‑M2/145‑1 (MQ=255)
                                                                                                                                         gtCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTcg                                          <  1:303949‑M2/107‑1 (MQ=255)
                                                                                                                                          tCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGa                                                            <  2:120341‑M2/89‑1 (MQ=255)
                                                                                                                                           cAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGa                                                                                          <  4:409676/59‑1 (MQ=255)
                                                                                                                                           cAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGc                                                                                     <  3:814538/64‑1 (MQ=255)
                                                                                                                                           cAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGcc                                                        <  2:480565/93‑1 (MQ=255)
                                                                                                                                           cAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGcc                                                        >  1:480565/1‑93 (MQ=255)
                                                                                                                                           |                                                                                                                                                  
GCTAGCCTTTTTGCCGGATATCAAAACCGAATCAACTACCGCTTCTGGTCTGCCGGTGTTCTATAAAAACAAAATGGATACCCACGCCAAAGCCATTGACGGCTATACGCCGCGCGATTACTTAACCCACTGGTTAAGTCAGTGGGTCCGCGACTATGGGATTGATGGTTTTCGGGTCGATACCGCCAAACATGTTGAGTTGCCCGCCTGGCAGCAACTGAAAACCGAAGCCAGCGCCGCGCTTCGCGAATGGAAAAAAGCTAACCCCGACAAAGCATTAGATGAC  >  NC_000913/3738696‑3738981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.