mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 25.0% | 120.2 / 32.3 | 76 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 20 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 110 (0.540) | 8 (0.040) | 7/500 | 15.0 | 6.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 132 (0.680) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 7 (0.040) | 3/440 | 16.6 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4296394 | NA (NA) | noncoding (560/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 3788374 | 783 (3.870) | 6 (0.030) | 5/516 | 16.6 | 0.76% | coding (274/960 nt) | yibQ | putative polysaccharide deacetylase |
| ? | NC_000913 | 3788378 = | 781 (3.870) | coding (278/960 nt) | yibQ | putative polysaccharide deacetylase | |||||
| * | ? | NC_000913 | = 4542690 | 106 (0.520) | 4 (0.020) | 4/500 | 17.0 | 3.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 132 (0.680) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 3702834 | 197 (0.970) | 4 (0.020) | 4/500 | 17.0 | 2.0% | coding (35/1005 nt) | dppF | dipeptide/heme ABC transporter ATPas |
| ? | NC_000913 | = 3702839 | 193 (0.990) | coding (30/1005 nt) | dppF | dipeptide/heme ABC transporter ATPas | |||||
| * | ? | NC_000913 | = 4633116 | 158 (0.780) | 4 (0.020) | 4/506 | 17.2 | 2.6% | noncoding (26/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 4633138 | 149 (0.750) | noncoding (48/140 nt) | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | NC_000913 | 2692907 = | 198 (0.980) | 5 (0.030) | 4/510 | 17.2 | 2.5% | coding (2637/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase |
| ? | NC_000913 | = 2692903 | 192 (0.960) | coding (2641/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase | |||||
| * | ? | NC_000913 | = 3830879 | 758 (3.740) | 4 (0.020) | 4/514 | 17.3 | 0.53% | coding (423/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein |
| ? | NC_000913 | 3830884 = | 758 (3.770) | coding (428/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein | |||||
| * | ? | NC_000913 | = 3800688 | 712 (3.520) | 4 (0.020) | 4/516 | 17.3 | 0.56% | coding (278/699 nt) | waaY | lipopolysaccharide core biosynthesis protein |
| ? | NC_000913 | 3800693 = | 707 (3.510) | coding (273/699 nt) | waaY | lipopolysaccharide core biosynthesis protein | |||||
| * | ? | NC_000913 | = 3565882 | 177 (0.870) | 4 (0.020) | 4/516 | 17.3 | 2.2% | coding (700/2448 nt) | glgP | glycogen phosphorylase |
| ? | NC_000913 | 3565886 = | 177 (0.880) | coding (696/2448 nt) | glgP | glycogen phosphorylase | |||||