New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3670807 =69 (0.670)3 (0.030) 3/252 NT 3.8% coding (1216/1650 nt) treF cytoplasmic trehalase
?NC_000913 3670847 = 86 (0.870)coding (1256/1650 nt) treF cytoplasmic trehalase
Rejected: Frequency below/above cutoff threshold.

AACTGGAGAGCGCCATCGCCAACATCTCGGCGCTGAAAGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACG  >  NC_000913/3670661‑3670954
                                                                                                                                                  |                                                                                                                                                   
tgcccagccgttgggtttatcccactgtccaccggtttcgtactcgcttgccagaatcccgccaggtgtcagtaaccgactgcgcacggcgtttgccagacgatcggcctgttcatggttcgccataccgacatagagtggcacaaTgg                                                                                                                                                   >  2:606029‑M1/147‑149 (MQ=255)
aaCTGGAGAGCGCCATCGCCAACATCTCGGCGCTGAAAGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTgg                                                                                                                                                   <  1:654273/149‑1 (MQ=255)
 gcccagccgttgggtttatcccactgttcaccggtttcgtactcgcttgccagaatcccgccaggtgtcagtaaccgactgcgcacggcgtttgccagacgatcggcctgttcatggttcgccataccgacatagagtggcacaaTGGc                                                                                                                                                  >  2:195696‑M1/146‑149 (MQ=255)
 gcccagccgttgggtttatcccactgttcaccggtctcgtactcgcttgccagaatcccgccaggtgtcagtaaccgactgcgcacggcgtttgccagacgatcggcctgttcatggttcgccataccgacatagagtggcacaaTGGc                                                                                                                                                  >  3:836851‑M1/146‑149 (MQ=255)
     gagaGCGCCATCGCCAACATCTCGGCGCTGAAAGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGAcg                                                                                                                                              >  4:286705/1‑149 (MQ=255)
                   cAACATCTCGGCGCTGAAAGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGgcgc                                                                                                                                <  3:771265/149‑1 (MQ=255)
                     aCATCTCGGCGCTGAAAGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTg                                                                                                                              <  4:188018/149‑1 (MQ=255)
                           cGGCGCTGAAAGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTcc                                                                                                                        <  4:889085/149‑1 (MQ=255)
                                  gAAGGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCGgccg                                                                                                                 >  2:153185/1‑149 (MQ=255)
                                  gAAAGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTgccg                                                                                                                 >  2:255932/1‑149 (MQ=255)
                                  gAAAGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTgccg                                                                                                                 >  1:776344/1‑149 (MQ=255)
                                     aGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCa                                                                                                              >  4:681249/1‑149 (MQ=255)
                                     aGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCa                                                                                                              <  3:286705/149‑1 (MQ=255)
                                         gagaAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATtgt                                                                                                          >  2:781837/1‑149 (MQ=255)
                                         actcgcttgccagaatcccgccaggtgtcagtaaccgactgcgcacggcgtttgccagacgatcggcctgttcatggttcgccataccgacatagagtggcaccaTGGCGACGCGAACAACTGGCGCTGTTTTCCTCGGCCGCCATtgt                                                                                                          >  4:665261‑M1/106‑149 (MQ=255)
                                          agaAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATtgtg                                                                                                         <  4:445951/149‑1 (MQ=255)
                                           gaAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGc                                                                                                        >  1:641296/1‑149 (MQ=255)
                                           gaAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGc                                                                                                        <  2:415549/149‑1 (MQ=255)
                                              agagACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCAc                                                                                                     <  3:917144/149‑1 (MQ=255)
                                                 gaCAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCActct                                                                                                  <  1:601231/149‑1 (MQ=255)
                                                  aCAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTa                                                                                                 >  2:510009/1‑149 (MQ=255)
                                                   cagaatcccgccaggtgtcagtaaccgactgcgcacggcgtttgccagacgatcggcctgttcatggttcgccataccgacatagagtggcacaat                                                                                                                                                     <  4:364212‑M1/1‑1 (MQ=255)
                                                   cagaatcccgccaggtgtcagtaaccgactgcgcacggcgtttgccagacgatcggcctgttcatggttcgccataccgacatagagtggcacaat                                                                                                                                                     >  3:364212‑M1/96‑96 (MQ=255)
                                                     gAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGt                                                                                              >  2:780337/1‑149 (MQ=255)
                                                     gAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGt                                                                                              >  2:891888/1‑149 (MQ=255)
                                                       aGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCg                                                                                            <  1:781837/149‑1 (MQ=255)
                                                         cACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGt                                                                                          <  1:638667/149‑1 (MQ=255)
                                                          aCTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTa                                                                                         <  1:891888/149‑1 (MQ=255)
                                                           cTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGTGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTAt                                                                                        >  4:688933/1‑149 (MQ=255)
                                                             gTTGCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATgg                                                                                      <  4:315166/149‑1 (MQ=255)
                                                                  gCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAAc                                                                                 >  2:907367/1‑149 (MQ=255)
                                                                   ccAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAAcc                                                                                >  2:182159/1‑149 (MQ=255)
                                                                     aGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCAt                                                                              >  1:12487/1‑149 (MQ=255)
                                                                     aGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCAt                                                                              >  4:358748/1‑149 (MQ=255)
                                                                       aaaGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCActct                                                                                                  >  2:308198/1‑127 (MQ=255)
                                                                       aaaGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCActct                                                                                                  <  1:308198/127‑1 (MQ=255)
                                                                        aaGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGaa                                                                           <  1:510009/149‑1 (MQ=255)
                                                                         aGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAAc                                                                          >  2:512661/1‑149 (MQ=255)
                                                                          gCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACa                                                                         >  1:330902/1‑149 (MQ=255)
                                                                          gCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACa                                                                         >  2:445858/1‑149 (MQ=255)
                                                                           ccAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAg                                                                        >  4:454291/1‑149 (MQ=255)
                                                                            cAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAgg                                                                       >  1:206271/1‑149 (MQ=255)
                                                                             aGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGc                                                                      <  4:32494/149‑1 (MQ=255)
                                                                             aGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGc                                                                      >  2:252057/1‑149 (MQ=255)
                                                                             aGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGc                                                                      <  4:274538/149‑1 (MQ=255)
                                                                               tGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCg                                                                    >  3:555561/1‑149 (MQ=255)
                                                                                  ccGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATc                                                                 <  1:892216/149‑1 (MQ=255)
                                                                                  ccGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATc                                                                 <  3:733421/149‑1 (MQ=255)
                                                                                     tCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACTGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTc                                                              <  4:496702/149‑1 (MQ=255)
                                                                                      cgcgATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCt                                                             <  3:454291/149‑1 (MQ=255)
                                                                                       gcgATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGGCTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTg                                                            <  1:153185/149‑1 (MQ=255)
                                                                                       gcgATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTg                                                            <  3:91350/149‑1 (MQ=255)
                                                                                         gATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGc                                                          >  4:445219/1‑149 (MQ=255)
                                                                                             cGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAAc                                                      >  4:384902/1‑149 (MQ=255)
                                                                                              ggTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACg                                                     >  2:787919/1‑149 (MQ=255)
                                                                                               gTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGc                                                    >  1:488107/1‑149 (MQ=255)
                                                                                                  aaCCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTgg                                                           <  4:606612/139‑1 (MQ=255)
                                                                                                  aaCCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTgg                                                           >  3:606612/1‑139 (MQ=255)
                                                                                                   aCCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTg                                                <  3:578471/149‑1 (MQ=255)
                                                                                                     cGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTgcg                                              >  3:353539/1‑149 (MQ=255)
                                                                                                          ccTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTTGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTc                                         <  2:597437/149‑1 (MQ=255)
                                                                                                           ctctGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCg                                        <  1:68811/149‑1 (MQ=255)
                                                                                                            tctGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCgg                                       >  1:207430/1‑149 (MQ=255)
                                                                                                              tGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGtt                                     >  2:158289/1‑149 (MQ=255)
                                                                                                               ttcatggttcgccataccgacatagagtggcacaaTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCAt                                                                                                             >  2:213707‑M1/36‑76 (MQ=255)
                                                                                                               ttcatggttcgccataccgacatagagtggcacaaTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCAt                                                                                                             <  1:213707‑M1/41‑1 (MQ=255)
                                                                                                                   tgatgaAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGa                                <  3:793336/149‑1 (MQ=255)
                                                                                                                      tgaAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTTGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGacac                             >  3:528047/1‑149 (MQ=255)
                                                                                                                      tgaAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGacac                             <  1:842407/149‑1 (MQ=255)
                                                                                                                       gaAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACAcc                            >  4:715616/1‑149 (MQ=255)
                                                                                                                             ggCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCgg                      <  3:817311/149‑1 (MQ=255)
                                                                                                                               cATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGa                    <  2:702565/149‑1 (MQ=255)
                                                                                                                                   tACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCt                <  4:555561/149‑1 (MQ=255)
                                                                                                                                    aCCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTg               <  4:574332/149‑1 (MQ=255)
                                                                                                                                     ccGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTgg              >  1:457383/1‑149 (MQ=255)
                                                                                                                                      cgcgATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGc             <  3:732353/149‑1 (MQ=255)
                                                                                                                                            tACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGa       <  2:335422/149‑1 (MQ=255)
                                                                                                                                            tACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGa       <  1:24428/149‑1 (MQ=255)
                                                                                                                                             aCGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCAt                                                                              <  4:712633/77‑1 (MQ=255)
                                                                                                                                             aCGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCAt                                                                              >  3:712633/1‑77 (MQ=255)
                                                                                                                                                aCTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTAc   <  1:445858/149‑1 (MQ=255)
                                                                                                                                                 cTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACg  >  3:822521/1‑149 (MQ=255)
                                                                                                                                                 cTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACg  >  2:557574/1‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
AACTGGAGAGCGCCATCGCCAACATCTCGGCGCTGAAAGGCGAGAAAGAGACAGAAGCACTGTTCCGCCAGAAAGCCAGTGCCCGTCGCGATGCGGTAAACCGTTACCTCTGGGATGATGAAAACGGCATCTACCGCGATTACGACTGGCGACGCGAACAACTGGCGCTGTTTTCCGCTGCCGCCATTGTGCCACTCTATGTCGGTATGGCGAACCATGAACAGGCCGATCGTCTGGCAAACGCCGTGCGCAGTCGGTTACTGACACCTGGCGGGATTCTGGCAAGCGAGTACG  >  NC_000913/3670661‑3670954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.